R: Oscope - A statistical pipeline for identifying oscillatory...
Oscope-package
R Documentation
Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq
Description
Oscope is a statistical pipeline developed to identifying and recovering the base cycle profiles
of oscillating genes in an unsynchronized single cell RNA-seq experiment.
The Oscope pipeline includes three modules: a sine model module to search for
candidate oscillator pairs; a K-medoids clustering module to cluster candidate oscillators
into groups; and an extended nearest insertion module to recover the base cycle order
for each oscillator group.
Details
Package:
Oscope
Type:
Package
Version:
0.99.0
Date:
2015-7-27
License:
Artistic-2.0
Author(s)
Ning Leng
Maintainer: Ning Leng <lengning1@gmail.com>
References
Leng et al. Oscope - A statistical pipeline for identifying oscillatory genes in unsynchronized single cell RNA-seq, accepted