R: Pathway Analysis Methods for Genomewide Association Data
PAGWAS-package
R Documentation
Pathway Analysis Methods for Genomewide Association Data
Description
Bayesian hierarchical methods for pathway analysis of genomewide association data: Normal/Bayes factors and Sparse Normal/Adaptive lasso. The Frequentist Fisher's method is included as well.
Evangelou, M., Dudbridge, F., Wernisch, L. (2014). Two novel pathway analysis methods based on a hierarchical model. Bioinformatics 30(5), 690 - 697
Evangelou, M., Rendon, A., Ouhewand, W. H., Wernisch, L., Dudbridge, F. (2012) Comparison of methods for competitive tests of pathway analysis. Plos One 7(7): e41018