Creates a pathway data frame

Description

Returns a data frame with L rows and M columns. L is the number of SNPs in the genotypes data frame and M is the number of tested pathways.

Usage

create.pathway.df(genotypes,snps.paths)

Arguments

Value

A data frame with columns equal to the number of pathways in the pathway.snps list and rows equal to the number of tested SNPs

See Also

SNPs, genes, snps.to.pathways snps.to.genes

Examples

data(SNPs)
data(genes)
data(pathways)
data(genotypes)
snps.genes <- snps.to.genes(snp.info=SNPs,gene.info=genes, distance=0)
pathway.snps <- snps.to.pathways(pathways,snps.genes)
P <- create.pathway.df(genotypes=genotypes,snps.paths=pathway.snps)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(PAGWAS)
Loading required package: lars
Loaded lars 1.2

Loading required package: foreach
Loading required package: mnormt
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/PAGWAS/create.pathway.df.Rd_%03d_medium.png", width=480, height=480)
> ### Name: create.pathway.df
> ### Title: Creates a pathway data frame
> ### Aliases: create.pathway.df
> 
> ### ** Examples
> 
> data(SNPs)
> data(genes)
> data(pathways)
> data(genotypes)
> snps.genes <- snps.to.genes(snp.info=SNPs,gene.info=genes, distance=0)
> pathway.snps <- snps.to.pathways(pathways,snps.genes)
> P <- create.pathway.df(genotypes=genotypes,snps.paths=pathway.snps)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>