Last data update: 2014.03.03
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R: Generics For PRISMA Objects
plot.prismaMF | R Documentation |
Generics For PRISMA Objects
Description
Print and plot generic for the PRISMA matrix factorization objects.
Usage
## S3 method for class 'prismaMF'
plot(x, nLines = NULL, baseIndex = NULL, sampleIndex = NULL,
minValue = NULL, noRowClustering = FALSE, noColClustering = FALSE, type
= c("base", "coordinates"), ...)
Arguments
x |
PRISMA matrix factorization object
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nLines |
number of lines that should be plotted
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baseIndex |
which bases should be plotted
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sampleIndex |
which samples should be plotted
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minValue |
cut-off value, i.e., every value smaller than minValue won't be shown
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noRowClustering |
don't cluster the rows
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noColClustering |
don't cluster the columns
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type |
show the base (type = "base" , i.e. the B matrix) or
show the coordinate (type = "coordinates" , i.e. the C matrix).
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... |
not used
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Author(s)
Tammo Krueger <tammokrueger@googlemail.com>
See Also
estimateDimension , prismaHclust , prismaDuplicatePCA , prismaNMF
Examples
# please see the vingette for examles
Results
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