providers

Description

The central PSICQUIC server has only one purpose: to return a list of, and metadata about, the currently "live" PSICQUIC-compliant MI-QL websites. A list of these providers by the PSICQUIC object you create, and is returned by this method.

Usage

## S4 method for signature 'PSICQUIC'
providers(object)

Arguments

Value

A list of character strings, short readable names for the providers, e.g., "BioGrid", "IntAct".

Author(s)

Paul Shannon

See Also

interactions, rawQuery, addGeneInfo, IDMapper, interactionTypes, detectionMethods, speciesIDs

Examples

  psicquic <- PSICQUIC()
  providers(psicquic)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(PSICQUIC)
Loading required package: IRanges
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: biomaRt
Loading required package: httr
Loading required package: plyr

Attaching package: 'plyr'

The following object is masked from 'package:IRanges':

    desc

The following object is masked from 'package:S4Vectors':

    rename

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/PSICQUIC/providers.Rd_%03d_medium.png", width=480, height=480)
> ### Name: providers
> ### Title: providers
> ### Aliases: providers providers,PSICQUIC-method
> ###   S4method{providers}{PSICQUIC}
> ### Keywords: utilities
> 
> ### ** Examples
> 
>   psicquic <- PSICQUIC()
>   providers(psicquic)
 [1] "APID"              "BioGrid"           "bhf-ucl"          
 [4] "ChEMBL"            "DIP"               "HPIDb"            
 [7] "InnateDB"          "InnateDB-All"      "IntAct"           
[10] "mentha"            "MPIDB"             "MatrixDB"         
[13] "MINT"              "Reactome"          "Reactome-FIs"     
[16] "I2D"               "I2D-IMEx"          "InnateDB-IMEx"    
[19] "MolCon"            "UniProt"           "MBInfo"           
[22] "BindingDB"         "VirHostNet"        "Spike"            
[25] "BAR"               "EBI-GOA-nonIntAct" "ZINC"             
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>