This generic function sets the positions of the SNP data.
Should be used if you use alignment formats to store SNP data (i.e., data restricted to the polymorphic positions).
Usage
## S4 method for signature 'GENOME'
set.ref.positions(object, positions)
Arguments
object
an object of class "GENOME"
positions
a list of reference positions
Value
returned value is a modified object of class "GENOME"