ProteinAxisTrack

Description

A track to display an axis for protein or peptide sequences

Usage

ProteinAxisTrack(range = NULL, name = "Axis", addNC = FALSE, id = NULL,
  ...)

Arguments

Author(s)

Renan Sauteraud

See Also

GenomeAxisTrack

Examples

# Object construction
paxTrack <- ProteinAxisTrack()
pax2 <- ProteinAxisTrack(addNC=TRUE)
pax3 <- ProteinAxisTrack(littleTicks=TRUE)
# Plotting
plotTracks(c(paxTrack,pax2,pax3), from=1, to=100)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(Pviz)
Loading required package: Gviz
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/Pviz/ProteinAxisTrack.Rd_%03d_medium.png", width=480, height=480)
> ### Name: ProteinAxisTrack
> ### Title: ProteinAxisTrack
> ### Aliases: ProteinAxisTrack ProteinAxisTrack-class
> 
> ### ** Examples
> 
> # Object construction
> paxTrack <- ProteinAxisTrack()
> pax2 <- ProteinAxisTrack(addNC=TRUE)
> pax3 <- ProteinAxisTrack(littleTicks=TRUE)
> # Plotting
> plotTracks(c(paxTrack,pax2,pax3), from=1, to=100)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>