Plot frequency of response for a single clade.

Description

Plot an axis and the frequency of response of a single selected clade.

Usage

plot_clade(restab, clade, sequence = NULL, from = 0,
  to = max(restab$position), ...)

Arguments

Author(s)

Renan Sauteraud

See Also

restab, plot_inter, plotTracks

Examples

if(require(pepDat)){
  data(restab)
  plot_clade(restab, clade = c("A", "M"))
}

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(Pviz)
Loading required package: Gviz
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit


Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomicRanges
Loading required package: GenomeInfoDb
Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/Pviz/plot_clade.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot_clade
> ### Title: Plot frequency of response for a single clade.
> ### Aliases: plot_clade
> 
> ### ** Examples
> 
> if(require(pepDat)){
+   data(restab)
+   plot_clade(restab, clade = c("A", "M"))
+ }
Loading required package: pepDat
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>