Last data update: 2014.03.03
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R: Container for QDNAseq read count data
QDNAseqCopyNumbers | R Documentation |
Container for QDNAseq read count data
Description
Container for QDNAseq read count data
Assay data elements
An object of this class contains the following elements:
copynumber (numeric ) Corrected "count" signals in
[0,+∞) An object with only this field is created by
correctBins ().
segmented (numeric ; optional) Segmented data in
[0,+∞), added by calling segmentBins ().
calls (integer ; optional) Calls as -2=deletion,
-1=loss, 0=normal, 1=gain, 2=amplification, added by calling
callBins ().
probdloss (numeric ; optional) Probabilities of
deletions in [0,1], added by calling callBins ().
probloss (numeric ; optional) Probabilities of losses in
[0,1], added by calling callBins ().
probnorm (numeric ; optional) Probabilities of normal
copy number in [0,1], added by calling callBins ().
probgain (numeric ; optional) Probabilities of gains in
[0,1], added by calling callBins ().
probamp (numeric ; optional) Probabilities of
amplifications in [0,1], added by calling callBins ().
Missing values
The bin data (assay data) may contain missing values.
Author(s)
Ilari Scheinin
Results
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