Supported by Dr. Osamu Ogasawara and  providing  . |
|
Last data update: 2014.03.03 |
Calculates projections of the DataDescriptionCalculates the projections of the data object onto the directions from an
underlying Usage## S3 method for class 'epplab' fitted(object, which = 1, ...) Arguments
DetailsThe default projection direction is the direction with the best objective criterion. ValueA matrix, having in each column the projection onto the direction of a certain run, and in each row the projected value. Author(s)Daniel Fischer Exampleslibrary(tourr) data(olive) res <- EPPlab(olive[,3:10],PPalg="PSO",PPindex="KurtosisMin",n.simu=10, maxiter=20) # Projection to the best direction fitted(res) # Projection to the 1,2,5 best directions: fitted(res,which=c(1,2,5)) Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(REPPlab)
Loading required package: rJava
Loading required package: lattice
Loading required package: LDRTools
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/REPPlab/fitted.epplab.Rd_%03d_medium.png", width=480, height=480)
> ### Name: fitted.epplab
> ### Title: Calculates projections of the Data
> ### Aliases: fitted,epplab-method fitted-method fitted.epplab
> ### Keywords: methods print
>
> ### ** Examples
>
>
> library(tourr)
> data(olive)
> res <- EPPlab(olive[,3:10],PPalg="PSO",PPindex="KurtosisMin",n.simu=10, maxiter=20)
Simulation 0... finished (I -40.563388898 in 0.633s)
Simulation 1... finished (I -13.883229050 in 0.144s)
Simulation 2... finished (I -8.259537463 in 0.043s)
Simulation 3... finished (I -27.873642958 in 0.022s)
Simulation 4... finished (I -0.740216855 in 0.025s)
Simulation 5... finished (I -29.547568449 in 0.075s)
Simulation 6... finished (I -19.877104036 in 0.082s)
Simulation 7... finished (I -2.324882419 in 0.453s)
Simulation 8... finished (I -22.161224390 in 0.184s)
Simulation 9... finished (I -4.146719778 in 0.026s)
Warning message:
In EpplabOutputConv(jepplab, maxiter) :
There were 10 non-converged simulation runs!
>
> # Projection to the best direction
> fitted(res)
Run1
1 -0.1237391842
2 -0.1204480748
3 -0.2323342031
4 -0.2817858186
5 -0.2610085497
6 -0.3919332027
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8 -0.1535946556
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>
> # Projection to the 1,2,5 best directions:
> fitted(res,which=c(1,2,5))
Run1 Run2 Run5
1 -0.1237391842 -0.2351526626 0.2701055041
2 -0.1204480748 -0.1215981201 0.3389697517
3 -0.2323342031 -0.3817570642 0.1446765557
4 -0.2817858186 -0.2725492173 -0.1160010293
5 -0.2610085497 -0.2326107544 0.0152353060
6 -0.3919332027 -0.2361968238 -0.2467269601
7 -0.3033477533 -0.3252823999 -0.3856961382
8 -0.1535946556 -0.1125695341 0.3090571557
9 -0.1771702170 -0.1270014465 0.0782550562
10 -0.1345203128 -0.2226873548 0.6015810725
11 -0.0666548494 -0.1717905175 0.7239844269
12 -0.1989011953 -0.2477642534 0.5570429677
13 -0.2043329555 -0.1220302785 0.0317611009
14 -0.3342747634 -0.2781916082 -0.1647335482
15 -0.3601533147 -0.1068697164 -0.1995644067
16 -0.0599871473 -0.1439832975 0.4191868532
17 -0.2816965893 -0.2670074566 -0.0599574224
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and