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Last data update: 2014.03.03

R: Parse a Risoe SEQ-file to a sequence neccessary for...

read_SEQ2R

R Documentation

Parse a Risoe SEQ-file to a sequence neccessary for simulating quartz luminescence

Description

A SEQ-file created by the Risoe Sequence Editor can be imported to simulate the sequence written in the sequence editor.

Usage

read_SEQ2R(file, lab.dose_rate = 1, txtProgressBar = TRUE)

Arguments

`file`	`character` (required): a *.seq file created by the Risoe Sequence Editor
`lab.dose_rate`	`character` (with default): set the dose rate of the radiation source in the laboratory [Gy/s]. Default: 1 Gy/s
`txtProgressBar`	`logical` (with default): enables or disables the txtProgressBar for a visuell control of the progress. Default: txtProgressBar = TRUE

Details

Supported versions

Supppored and tested: version 4.36.

Value

This function returns a list with the parsed *.seq file and the required steps for model_LuminescenceSignals.

Function version

0.1.0

Author(s)

Johannes Friedrich, University of Bayreuth (Germany),

References

Riso: Sequence Editor User Manual. Available at: http://www.nutech.dtu.dk/english/-/media/Andre_Universitetsenheder/Nutech/Produkter%20og%20services/Dosimetri/radiation_measurement_instruments/tl_osl_reader/Manuals/SequenceEditor.ashx?la=da

Examples

##search "example_SAR_cycle.SEQ" in "extdata" in package "RLumModel"
path <- system.file("extdata", "example_SAR_cycle.SEQ", package="RLumModel")

sequence <- read_SEQ2R(file = path)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(RLumModel)
Loading required package: Luminescence
Welcome to the R package Luminescence version 0.6.0 [Built: 2016-05-30 16:47:30 UTC]
A tunnelling electron: 'God does not play dice.'

Attaching package: 'RLumModel'

The following object is masked from 'package:Luminescence':

    model_LuminescenceSignals

> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/RLumModel/read_SEQ2R.Rd_%03d_medium.png", width=480, height=480)
> ### Name: read_SEQ2R
> ### Title: Parse a Risoe SEQ-file to a sequence neccessary for simulating
> ###   quartz luminescence
> ### Aliases: read_SEQ2R
> 
> ### ** Examples
> 
> ##search "example_SAR_cycle.SEQ" in "extdata" in package "RLumModel"
> path <- system.file("extdata", "example_SAR_cycle.SEQ", package="RLumModel")
> 
> sequence <- read_SEQ2R(file = path)

 [read_SEQ2R()] 
	 Parse *.seq file to sequence for RLumModel
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> dev.off()
null device 
          1 
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