Plotting of a ROTS object

Description

Plots the ROTS objects created with the ROTS package.

Usage

  ## S3 method for class 'ROTS'
plot(x, fdr=0.05, type="volcano", ...)

Arguments

Details

This function plots the results from a ROTS object using given false discovery rate threshold.

Value

Plots the results from ROTS object.

Author(s)

Fatemeh Seyednasrollah, Tomi Suomi, Laura L. Elo Maintainer: Fatemeh Seyednasrollah <fatsey@utu.fi>

See Also

affySpikeIn

Examples

  ## ROTS-statistic for the Affymetrix spike-in data. 
  rots.out <- ROTS(data = affySpikeIn, groups = c(rep(0,5), rep(1,5)),
      B = 100, K = 500 , seed = 1234)
  ## Plotting of the ROTS results.
  plot(rots.out)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(ROTS)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/ROTS/plot.ROTS.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plot.ROTS
> ### Title: Plotting of a ROTS object
> ### Aliases: plot.ROTS
> ### Keywords: math
> 
> ### ** Examples
> 
>   ## ROTS-statistic for the Affymetrix spike-in data. 
>   rots.out <- ROTS(data = affySpikeIn, groups = c(rep(0,5), rep(1,5)),
+       B = 100, K = 500 , seed = 1234)
Bootstrapping samples
Optimizing parameters
Calculating p-values
Calculating FDR
>   ## Plotting of the ROTS results.
>   plot(rots.out)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>