Class "RTCAtimeline"

Description

Time line of actions performed by the xCelligence device, supporting CRUD manipulations (create, read, update and delete).

Objects from the Class

Objects can be created by calls of the form new("RTCAtimeline"). However, it is more common to be called implicitly by creating an instance of RTCA object.

Slots

actionTrack:

Object of class "data.frame", records action track in the form of two-column data.frame. The two columns must have the names ‘time’ and ‘action’.

timeUnit:

Object of class "character", recording the unit of time points stored in the actionTrack slot.

startTime:

Object of class "POSIXct", the absolute time when the measurement started (at the time point ‘0’)

Methods

addAction

signature(object = "RTCAtimeline", time = "numeric", action = "character"): add action at the specified time

actionTrack

signature(object = "RTCAtimeline"): get the action track in the form of data.frame

actionTrack<-

signature(object = "RTCAtimeline", value = "data.frame"): assign the action track

getAction

signature(object = "RTCAtimeline", time = "numeric"): get action at the specified time

orderAction

signature(object = "RTCAtimeline"): order the action track by the time

reset

signature(object = "RTCAtimeline"): undo all editing of the object and reset it to the initial state

rmAction

signature(object = "RTCAtimeline", time = "numeric"): remove the action at the specified time

timeUnit

signature(object = "RTCAtimeline"): return the time unit used by the actiont track

timeUnit<-

signature(object = "RTCAtimeline", value = "character"): assign the time unit used by the actiont track

start

signature(object = "RTCAtimeline"): return the starting POSIXct time of the experiment

timeUnit<-

signature(object = "RTCAtimeline", value = "character"): assign the starting POSIXct time of the experiment

Author(s)

Jitao David Zhang jitao_david.zhang@roche.com

References

1

http://www.xcelligence.roche.com/ introduces xCelligence system.

2

http://www.roche-applied-science.com/proddata/gpip/3_8_9_1_1_1.html for brief introduction into RTCA

See Also

RTCA

Examples

tl <- new("RTCAtimeline")
show(tl)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(RTCA)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: gtools
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/RTCA/RTCAtimeline-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: RTCAtimeline-class
> ### Title: Class "RTCAtimeline"
> ### Aliases: RTCAtimeline-class
> ###   addAction,RTCAtimeline,numeric,character-method actionTrack
> ###   actionTrack,RTCAtimeline-method actionTrack<-
> ###   actionTrack<-,RTCAtimeline,data.frame-method addAction
> ###   addAction,RTCAtimeline,numeric,character-method getAction
> ###   getAction,RTCAtimeline,numeric-method orderAction
> ###   orderAction,RTCAtimeline-method reset reset,RTCAtimeline-method
> ###   rmAction rmAction,RTCAtimeline,numeric-method updateAction
> ###   updateAction,RTCAtimeline,numeric,character-method timeUnit
> ###   timeUnit,RTCAtimeline-method timeUnit<-
> ###   timeUnit<-,RTCAtimeline,character-method startTime
> ###   startTime,RTCAtimeline-method startTime<-
> ###   startTime<-,RTCAtimeline,POSIXct-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> tl <- new("RTCAtimeline")
> show(tl)
RTCAtimeline
================================================
 time action
    0  start
================================================
Time unit: hour 
RTCA-run start time: 2016-07-02 23:50:56 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>