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Last data update: 2014.03.03

R: PLOT GRID EFFECT OF RTCA

plotGridEffect

R Documentation

PLOT GRID EFFECT OF RTCA

Description

Plot the mean and deviation of rows/columns of a RTCA E-plate, to provide hints of potential row/column effect of the plate

Usage

plotGridEffect(rtca, mode = c("column", "row"), xlab = "time point",
ylab = "readout", legend = TRUE, col, ...)

Arguments

`rtca`	An object of `RTCA`
`mode`	character, either “column” or “row”, to choose which effect to depict
`xlab`	x-axis label
`ylab`	y-axis label
`legend`	logical, whether the legend should be added
`col`	Color of the curves
`...`	Further parameters passed to `plot` function

Details

The error bars depicts the standard deviations

Value

NULL, the funciton is called for its side effect

Author(s)

Jitao David Zhang

Examples

require(RTCA)
  
ofile <- system.file("extdata/testOutput.csv", package="RTCA")
x <- parseRTCA(ofile)
plotGridEffect(x)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(RTCA)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: RColorBrewer
Loading required package: gtools
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/RTCA/plotGridEffect.Rd_%03d_medium.png", width=480, height=480)
> ### Name: plotGridEffect
> ### Title: PLOT GRID EFFECT OF RTCA
> ### Aliases: plotGridEffect
> ### Keywords: hplot
> 
> ### ** Examples
> 
> require(RTCA)
>   
> ofile <- system.file("extdata/testOutput.csv", package="RTCA")
> x <- parseRTCA(ofile)
Read 245 items
> plotGridEffect(x)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>