RTCGA Theme For ggplot2

Description

Additional RTCGA theme for ggtheme, based on theme_pander.

Usage

theme_RTCGA(base_size = 11, base_family = "", ...)

Arguments

Issues

If you have any problems, issues or think that something is missing or is not clear please post an issue on https://github.com/RTCGA/RTCGA/issues.

Author(s)

Marcin Kosinski, m.p.kosinski@gmail.com

See Also

RTCGA website http://rtcga.github.io/RTCGA/Visualizations.html.

Other RTCGA: RTCGA-package, boxplotTCGA, checkTCGA, convertTCGA, datasetsTCGA, downloadTCGA, expressionsTCGA, heatmapTCGA, infoTCGA, installTCGA, kmTCGA, mutationsTCGA, pcaTCGA, readTCGA, survivalTCGA

Examples

library(RTCGA.clinical)
survivalTCGA(BRCA.clinical, OV.clinical, extract.cols = "admin.disease_code") -> BRCAOV.survInfo
kmTCGA(BRCAOV.survInfo, explanatory.names = "admin.disease_code",
			 xlim = c(0,4000))
					 

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(RTCGA)
Welcome to the RTCGA (version: 1.2.2).
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/RTCGA/theme_RTCGA.Rd_%03d_medium.png", width=480, height=480)
> ### Name: theme_RTCGA
> ### Title: RTCGA Theme For ggplot2
> ### Aliases: theme_RTCGA
> 
> ### ** Examples
> 
> 
> library(RTCGA.clinical)
> survivalTCGA(BRCA.clinical, OV.clinical, extract.cols = "admin.disease_code") -> BRCAOV.survInfo
> kmTCGA(BRCAOV.survInfo, explanatory.names = "admin.disease_code",
+ 			 xlim = c(0,4000))
> 					 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>