Last data update: 2014.03.03
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R: Compute p-value and score for the ASKAT method
pvalue.ASKAT | R Documentation |
Compute p-value and score for the ASKAT method
Description
Compute p-value and score for the ASKAT method
Usage
pvalue.ASKAT(RH0, y, X, Phi, W, G)
Arguments
RH0 |
a vector of length 2 which the results (output) of the
Estim.H0.ASKAT function (i.e. variance components
estimates under the null model)
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y |
vector of phenotype data (one entry per individual), of
length n.
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X |
matrix of covariates including intercept (dimension:
n \times p, with p the number of covariates)
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Phi |
Relationship matrix (i.e. twice the kinship matrix); an
n \times n square symmetric positive-definite matrix.
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G |
matrix of genotypes
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Value
A list with score and p-value for the ASKAT test on the
given data. The list contains the elements score and
p.value .
Author(s)
Karim Oualkacha
Results
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