Brunner, E (2009) Repeated measures under
non-sphericity. Proceedings of the 6th St. Petersburg
Workshop on Simulation, 605-609.
Jung K, Becker B,
Brunner B and Beissbarth T (2011) Comparison of Global
Tests for Functional Gene Sets in Two-Group Designs and
Selection of Potentially Effect-causing Genes.
Bioinformatics, 27: 1377-1383.
Examples
### Global comparison of a set of 100 genes between two experimental groups.
X1 = matrix(rnorm(1000, 0, 1), 10, 100)
X2 = matrix(rnorm(1000, 0.1, 1), 10, 100)
RHD = RepeatedHighDim(X1, X2, paired=FALSE)
summary(RHD)
Results
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> library(RepeatedHighDim)
Loading required package: MASS
Loading required package: nlme
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/RepeatedHighDim/TestStatSimple.Rd_%03d_medium.png", width=480, height=480)
> ### Name: TestStatSimple
> ### Title: Calculation of test statistic
> ### Aliases: TestStatSimple
>
> ### ** Examples
>
> ### Global comparison of a set of 100 genes between two experimental groups.
> X1 = matrix(rnorm(1000, 0, 1), 10, 100)
> X2 = matrix(rnorm(1000, 0.1, 1), 10, 100)
> RHD = RepeatedHighDim(X1, X2, paired=FALSE)
> summary(RHD)
Number of Genes: 10
Number of Samples in Group 1: 100
Number of Samples in Group 2: 100
Samples are Paired: FALSE
effect F df1 df2 p
1 Group 1.2147 9.8701 1945.064 0.2768
>
>
>
>
>
> dev.off()
null device
1
>
providing 
.