Read / write Ragraph objects

Description

These functions will write an Ragraph object to or from a file.

Usage

agwrite(graph, filename)
agread(filename, layoutType="dot", layout=TRUE)

Arguments

Details

These function are wrappers to agwrite() and agread() calls in Graphviz.

Author(s)

Jeff Gentry

See Also

agopen, agread

Examples

V <- letters[1:10]
M <- 1:4
g1 <- randomGraph(V, M, .2)
z <- agopen(g1, "foo", layout=FALSE) ## default layoutType 'dot'
file <- tempfile()
agwrite(z, file)


## supported input types
graphvizCapabilities()$layoutTypes
g2 <- agread(file, layout=TRUE)
if (interactive())
   plot(g2)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(Rgraphviz)
Loading required package: graph
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/Rgraphviz/agwrite.Rd_%03d_medium.png", width=480, height=480)
> ### Name: agwrite
> ### Title: Read / write Ragraph objects
> ### Aliases: agwrite agread
> ### Keywords: graphs
> 
> ### ** Examples
> 
> V <- letters[1:10]
> M <- 1:4
> g1 <- randomGraph(V, M, .2)
> z <- agopen(g1, "foo", layout=FALSE) ## default layoutType 'dot'
> file <- tempfile()
> agwrite(z, file)
NULL
> 
> 
> ## supported input types
> graphvizCapabilities()$layoutTypes
[1] "dot"   "circo" "fdp"   "neato" "osage" "twopi"
> g2 <- agread(file, layout=TRUE)
> #if (interactive())
>    plot(g2)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>