RnBClusterRun Class

Description

A class for configuring and running RnBeads on a scientific compute cluster.

Slots

architecture

A ClusterArchitecture object managing the settings for a scientific compute cluster

modules

A vector of pipeline modules

module.res.req

Stores the resource requirements for each module. A list containing named vectors for the resources

module.num.cores

Stores the number of cores for each module

Methods

setModuleResourceRequirements,RnBClusterRun,character,character-method

Sets the resource requirements for the different pipeline modules

setModuleNumCores,RnBClusterRun,integer,character-method

Sets the number of cores used by the different pipeline modules

getModuleNumCores,RnBClusterRun-method

Gets the number of cores used by the different pipeline modules

run,RnBClusterRun-method

Submit the pipeline modules to the cluster

Author(s)

Fabian Mueller

Results