optimize_parameter

Description

A function to optimize the parameters in power or sample size estimation.

Usage

optimize_parameter(fun = est_power, opt1, opt2, opt1Value, opt2Value, main,
  ...)

Arguments

Details

A function to optimize the parameters in power or sample size estimation.

Value

A power or sample size matrix, generated by different pair of two paramters.

Examples

#Optimization for power estimation
result<-optimize_parameter(fun=est_power,opt1="n",opt2="lambda0",opt1Value=c(3,5,10,15,20),opt2Value=c(1:5,10,20))
#Optimization for sample size estimation
## Not run: 
result<-optimize_parameter(fun=sample_size,opt1="lambda0",opt2="phi0",opt1Value=c(1,3,5),opt2Value=c(1.5,2,3),power=0.8)

## End(Not run)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(RnaSeqSampleSize)
Loading required package: RnaSeqSampleSizeData
Loading required package: edgeR
Loading required package: limma
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/RnaSeqSampleSize/optimize_parameter.Rd_%03d_medium.png", width=480, height=480)
> ### Name: optimize_parameter
> ### Title: optimize_parameter
> ### Aliases: optimize_parameter
> 
> ### ** Examples
> 
> #Optimization for power estimation
> result<-optimize_parameter(fun=est_power,opt1="n",opt2="lambda0",opt1Value=c(3,5,10,15,20),opt2Value=c(1:5,10,20))
> #Optimization for sample size estimation
> ## Not run: 
> ##D result<-optimize_parameter(fun=sample_size,opt1="lambda0",opt2="phi0",opt1Value=c(1,3,5),opt2Value=c(1.5,2,3),power=0.8)
> ## End(Not run)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>