Last data update: 2014.03.03
|
R: A base class for managing lists of Rsamtools file references
RsamtoolsFileList | R Documentation |
A base class for managing lists of Rsamtools file references
Description
RsamtoolsFileList is a base class for managing lists of file
references in Rsamtools; it is not intended for direct use –
see, e.g., BamFileList .
Usage
## S4 method for signature 'RsamtoolsFileList'
path(object, ...)
## S4 method for signature 'RsamtoolsFileList'
isOpen(con, rw="")
## S3 method for class 'RsamtoolsFileList'
open(con, ...)
## S3 method for class 'RsamtoolsFileList'
close(con, ...)
## S4 method for signature 'RsamtoolsFileList'
names(x)
## S4 method for signature 'RsamtoolsFileList'
yieldSize(object, ...)
Arguments
con, object, x |
An instance of a class derived from
RsamtoolsFileList .
|
rw |
Mode of file; ignored.
|
... |
Additional arguments.
|
Objects from the Class
Users do not directly create instances of this class; see, e.g.,
BamFileList-class .
Functions and methods
This class inherits functions and methods for subseting, updating, and
display from the SimpleList class.
Methods:
- isOpen:
Report whether each file in the list is currently
open.
- open:
Attempt to open each file in the list.
- close:
Attempt to close each file in the list.
- names:
Names of each element of the list or, if names are
NULL , the basename of the path of each element.
Author(s)
Martin Morgan
Results
|