Package containing moderated t-tests to detect differentially expressed genes for paired and unpaired data
Details
Package:
SMVar
Type:
Package
Version:
1.3.3
Date:
2011-08-03
License:
GPL
SMVar.unpaired and SMVar.paired are the most important functions.
Author(s)
Guillemette Marot <guillemette.marot@inria.fr>
References
F. Jaffrezic, Marot, G., Degrelle, S., Hue, I. and Foulley, J. L. (2007) A structural mixed model for variances in differential gene expression studies. Genetical Research (89) 19:25
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(SMVar)
> png(filename="/home/ddbj/snapshot/RGM3/R_CC/result/SMVar/SMVar-package.Rd_%03d_medium.png", width=480, height=480)
> ### Name: SMVar-package
> ### Title: Structural Model for Variances
> ### Aliases: SMVar
> ### Keywords: package
>
> ### ** Examples
>
> library(SMVar)
> data(ApoAIdata)
> attach(ApoAIdata)
> SMVar.unpaired(ApoAIGeneId,list(ApoAICond1,ApoAICond2))
[1] "8 differentially expressed gene(s)"
[1] "Warning: No file is given to save the results of the analysis"
>
>
>
>
>
> dev.off()
null device
1
>