Coordinates of centromere

Description

Extracts coordinates of centromere for a particular chromosome

Usage

centromere(chromosome, build, verbose=FALSE)

Arguments

Value

integer: start and stop coordinates of centromere in basepairs

Author(s)

R. Scharpf

Examples

centromere(1, "hg18")
centromere("1", "hg18")
centromere("chr1", "hg18")
centromere(1, "hg19")
centromere("X", "hg18")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
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Type 'license()' or 'licence()' for distribution details.

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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(SNPchip)
Welcome to SNPchip version 2.18.0
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/SNPchip/centromere.Rd_%03d_medium.png", width=480, height=480)
> ### Name: centromere
> ### Title: Coordinates of centromere
> ### Aliases: centromere
> ### Keywords: manip
> 
> ### ** Examples
> 
> centromere(1, "hg18")
[1] 121147476 123387476
> centromere("1", "hg18")
[1] 121147476 123387476
> centromere("chr1", "hg18")
[1] 121147476 123387476
> centromere(1, "hg19")
[1] 121535434 124535434
> centromere("X", "hg18")
[1] 58465033 61465033
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>