Last data update: 2014.03.03

 R: Associates point and tuple mutations with sequence features.
SeqFeatRR Documentation

Associates point and tuple mutations with sequence features.

Description

Package includes functions to analyze sequence alignments in FASTA format with known HLA types or other features. In case of HLA as a feature, possible HLA epitopes are predicted based on clusters of HLA-associated mutations. Various plots are provided to visualize results.

Details

Package: SeqFeatR
Type: Package
Title: Sequence-feature associations
Version: 0.1.7
Date: 2015-02-10
Author: Bettina Budeus
Maintainer: Bettina Budeus <bettina.budeus@stud.uni-due.de>
Depends: R(>=3.1.2), tcltk, relimp, tcltk2, Biostrings, plyr, plotrix, phangorn,
qvalue, widgetTools, ggplot
License: GPL (>= 3)

Author(s)

Bettina Budeus

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO