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Last data update: 2014.03.03

R: Get the reconstructed condition-specific lncRNA-regulated...

getInteUMGraph

R Documentation

Get the reconstructed condition-specific lncRNA-regulated signal pathways

Description

Get the reconstructed condition-specific LncRNA-regulated signal pathways embedded by lncRNAs of competitive regulation through linking to their regulated-mRNAs.

Usage

getInteUMGraph(LncGenePairs)

Arguments

LncGenePairs

A data frame. It contains two columns, the first is lncRNA names and the second is mRNA names.

Details

The argument "LncGenePairs" represents competitively regulated lncRNA-mRNA interactions, which can be returned from the getLncGenePairs.

Value

A graph list.

Author(s)

Xinrui Shi, Chunquan Li and Xia Li

Examples

## Not run: 

### Integrate lncRNAs of competitive regulation into KEGG pathway graphs ###
  LncGenePairs<-GetExampleData(exampleData="LncGenePairs")
  inteUMGraph<-getInteUMGraph(LncGenePairs)
 
## End(Not run)