Standardise a sprectrum library data frame

Description

Standardise a sprectrum library data frame

Usage

canonicalFormat(dat, format = c("peakview", "openswath"))

Arguments

Value

a data frame of the library in canonical format

Examples

file <- paste(system.file("files",package="SwathXtend"),"Lib1.txt",sep="/")
dat <- read.delim2(file,sep="\t",stringsAsFactor = FALSE, header=TRUE)
dat <- try(canonicalFormat(dat, format = "peakview"))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(SwathXtend)
Loading required package: e1071
Loading required package: openxlsx
Loading required package: VennDiagram
Loading required package: grid
Loading required package: futile.logger
Loading required package: lattice
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/SwathXtend/canonicalFormat.Rd_%03d_medium.png", width=480, height=480)
> ### Name: canonicalFormat
> ### Title: Standardise a sprectrum library data frame
> ### Aliases: canonicalFormat
> 
> ### ** Examples
> 
> file <- paste(system.file("files",package="SwathXtend"),"Lib1.txt",sep="/")
> dat <- read.delim2(file,sep="\t",stringsAsFactor = FALSE, header=TRUE)
> dat <- try(canonicalFormat(dat, format = "peakview"))
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>