Checking for the integration quality of two libraries

Description

Checking for the integration quality of two libraries

Usage

checkQuality(datBaseLib, datExtLib, ...)

Arguments

Value

A list of quality indicators, including squared retention time (RT) correlation coefficient, root mean squared errors of RT residuals, and median of relative ion intensity correlation coefficient

Examples

libfiles <- paste(system.file("files",package="SwathXtend"),
   c("Lib2.txt","Lib3.txt"),sep="/")
datBaseLib <- readLibFile(libfiles[1])
datExtLib <- readLibFile(libfiles[2])
res <- checkQuality(datBaseLib, datExtLib)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
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> library(SwathXtend)
Loading required package: e1071
Loading required package: openxlsx
Loading required package: VennDiagram
Loading required package: grid
Loading required package: futile.logger
Loading required package: lattice
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/SwathXtend/checkQuality.Rd_%03d_medium.png", width=480, height=480)
> ### Name: checkQuality
> ### Title: Checking for the integration quality of two libraries
> ### Aliases: checkQuality
> 
> ### ** Examples
> 
> libfiles <- paste(system.file("files",package="SwathXtend"),
+    c("Lib2.txt","Lib3.txt"),sep="/")
> datBaseLib <- readLibFile(libfiles[1])
> datExtLib <- readLibFile(libfiles[2])
> res <- checkQuality(datBaseLib, datExtLib)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>