Last data update: 2014.03.03
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R: Translate a set of biological identifiers into an selected...
synergizer | R Documentation |
Translate a set of biological identifiers into an selected alternative.
Description
This function will translate between sets of biological
identifiers.
Usage
synergizer(authority = "ensembl", species = "Homo sapiens", domain = "hgnc_symbol", range = "entrezgene", ids = NULL, file = NULL)
Arguments
authority |
A character containing any authoritative
sources of identifier-mapping information.
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species |
A character containing the Species. Note
that the range of species supported depends on the choice
of authority. Examples: Homo sapiens, Mus musculus.
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domain |
This is the "namespace" (naming scheme) of
the database identifiers the user wishes to translate.
Examples: embl, ipi
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range |
This is the "namespace" (naming scheme) to
which the user wishes to translate the input identifiers.
Examples: embl, ipi
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ids |
a vector containing the ids to be translated
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file |
NULL or a string containing the name of the
file where the ids will be saved
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Value
A vector containing the translated ids.
References
http://llama.mshri.on.ca/synergizer/translate/
Examples
## Not run:
library('SynergizerR')
symbols.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="affy_hg_u95av2", range="hgnc_symbol",ids=c("1939_at","1503_at","1454_at") )
entrez.ids <- synergizer( authority = "ensembl", species = "Homo sapiens", domain="hgnc_symbol", range="entrezgene",ids=c("snph", "pja1", "prkdc", "RAD21L1", "Rorc", "kcnk16") )
## End(Not run)
Results
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