Last data update: 2014.03.03
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R: TarSeqQC: Targeted Sequencing Experiment Quality Control R...
TarSeqQC-package | R Documentation |
TarSeqQC: Targeted Sequencing Experiment Quality Control R package
Description
The package models targeted sequencing experiment output using previous
packages. This package includes the new following features:
Panel model:
Model customizable feature panels.
Evaluation of the sequencing run performance at median or
coverage level for each feature.
Exploration of sequenced features.
Quality Control of the sequencing run:
Customizable scan bam file parameters.
Customizable pileup build parameters.
Incorporation of fasta sequence.
Fast exploration of read profile for particular features or genomic
regions, coloring SNPs occurences.
Author(s)
Gabriela A. Merino gmerino@bdmg.com.ar, Cristobal Fresno
cfresno@bdmg.com.ar and Elmer A. Fernandez
efernandez@bdmg.com.ar
Results
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