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Last data update: 2014.03.03
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R: generate ratio heatmap
| genRatioHeatmap | R Documentation |
generate ratio heatmap
Description
Visualize timer ratios as a function of either FP1 or FP2 maturation time, and
protein half-life.
Usage
genRatioHeatmap(tRangeFP, Tfixed, TA, TB, channel, E, f=1, n, ramp)
Arguments
tRangeFP |
Vector containing two numerics specifying the range of maturation times to
display for the chosen fluorescence channel.
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Tfixed |
The maturation time of the FP that will remain fixed.
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TA |
tFT half-life in location A.
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TB |
tFT half-life in location B.
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channel |
Integer specifying fluorescence channel to be varied (1 or 2).
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E |
FRET value representing transfer from FP1 to FP2.
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f |
f=f2/f1, the ratio of prefactors relating the number of molecules to the
fluorescence intensity.
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n |
Integer specifying the number of data points. Choose a higher n for a
higher pixel density.
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ramp |
Colour ramp, see colorRampPalette for more details.
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Value
Returns a ggplot2 heatmap.
Author(s)
Joseph D. Barry
Examples
if (interactive()) vignette(topic="genPaperFigures", package="TimerQuant")
Results
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providing 
.