R Graphical Manual

Last data update: 2014.03.03

R: Plot Primordium Profile

plotPrimordiumProfile

R Documentation

Plot Primordium Profile

Visualizes primordium signal as a function of position with median and median absolute deviation across samples.

plotPrimordiumProfile(x, add, ylab, lwd, cex.lab, cex.axis, xlim, ylim, main, 
    col, lty, alpha)

`x`	A matrix of data where rows are samples and columns are sequential positions.
`add`	A logical indicating whether or not to add to the existing plot.
`ylab`	The y-axis label.
`lwd`	Integer specifying width of lines.
`cex.lab`	Integer specifying size of labels.
`cex.axis`	Integer specifying size of axis labels.
`xlim`	An optional vector of length 2 specifying the limits for the x-axis.
`ylim`	An optional vector of length 2 specifying the limits for the y-axis.
`main`	Plot title.
`col`	Line colour.
`lty`	Style of line
`alpha`	A numeric between zero and one specifying the level of transparency for the shaded region.

Produces a plot of signal vs position summarizing across multiple primordium samples.

Joseph D. Barry

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