Objects can be created by calls of the form new("Parameters", ...).
Slots
seed:
Object of class "integer" ~~
data:
Object of class "numeric" ~~
phenodata:
Object of class "integer" ~~
G:
Object of class "integer" ~~
Q:
Object of class "integer" ~~
S:
Object of class "integer" ~~
alphaA:
Object of class "numeric" ~~
alphaB:
Object of class "numeric" ~~
betaA:
Object of class "numeric" ~~
betaB:
Object of class "numeric" ~~
pA0:
Object of class "numeric" ~~
pA1:
Object of class "numeric" ~~
pB0:
Object of class "numeric" ~~
pB1:
Object of class "numeric" ~~
nuR:
Object of class "numeric" ~~
nuRho:
Object of class "numeric" ~~
alphaXi:
Object of class "numeric" ~~
betaXi:
Object of class "numeric" ~~
c2Max:
Object of class "numeric" ~~
alphaEta:
Object of class "numeric" ~~
betaEta:
Object of class "numeric" ~~
pOmega0:
Object of class "numeric" ~~
lambdaOmega:
Object of class "numeric" ~~
lambdaKappa:
Object of class "numeric" ~~
gamma2:
Object of class "numeric" ~~
c2:
Object of class "numeric" ~~
tau2Rho:
Object of class "numeric" ~~
tau2R:
Object of class "numeric" ~~
a:
Object of class "numeric" ~~
b:
Object of class "numeric" ~~
l:
Object of class "numeric" ~~
t:
Object of class "numeric" ~~
lambda:
Object of class "numeric" ~~
theta:
Object of class "numeric" ~~
phi:
Object of class "numeric" ~~
sigma2:
Object of class "numeric" ~~
r:
Object of class "numeric" ~~
rho:
Object of class "numeric" ~~
nu:
Object of class "numeric" ~~
delta:
Object of class "numeric" ~~
Delta:
Object of class "numeric" ~~
xi:
Object of class "numeric" ~~
Methods
"[[<-"
signature(x = "Parameters"): ...
"[["
signature(x = "Parameters"): ...
"$<-"
signature(x = "Parameters"): ...
$
signature(x = "Parameters"): ...
coerce
signature(from = "XdeParameter", to = "Parameters"): ...
show
signature(object = "Parameters"): ...
Examples
showClass("Parameters")
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(XDE)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Welcome to XDE version 2.18.0
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/XDE/Parameters-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: Parameters-class
> ### Title: Container for XDE parameters
> ### Aliases: Parameters-class [[<-,Parameters-method [[,Parameters-method
> ### $<-,Parameters-method $,Parameters-method
> ### coerce,XdeParameter,Parameters-method show,Parameters-method
> ### Keywords: classes
>
> ### ** Examples
>
> showClass("Parameters")
Class "Parameters" [package "XDE"]
Slots:
Name: seed data phenodata G Q S
Class: integer numeric integer integer integer integer
Name: alphaA alphaB betaA betaB pA0 pA1
Class: numeric numeric numeric numeric numeric numeric
Name: pB0 pB1 nuR nuRho alphaXi betaXi
Class: numeric numeric numeric numeric numeric numeric
Name: c2Max alphaEta betaEta pOmega0 lambdaOmega lambdaKappa
Class: numeric numeric numeric numeric numeric numeric
Name: gamma2 c2 tau2Rho tau2R a b
Class: numeric numeric numeric numeric numeric numeric
Name: l t lambda theta phi sigma2
Class: numeric numeric numeric numeric numeric numeric
Name: r rho nu delta Delta xi
Class: numeric numeric numeric numeric numeric numeric
Known Subclasses:
Class "ParametersD", directly
Class "ParametersMII", directly
Class "ParametersC", by class "ParametersD", distance 2
>
>
>
>
>
> dev.off()
null device
1
>