Values for the first MCMC iteration

Description

Accessor method for the values of the first MCMC iteration

Usage

firstMcmc(object)

Arguments

Value

Returns a list of the values to be used in the first iteration of the MCMC.

Author(s)

R. Scharpf

See Also

XdeParameter-class, lastMcmc

Examples

data(expressionSetList)
params <- new("XdeParameter", phenotypeLabel="adenoVsquamous",
              esetList=expressionSetList)
str(firstMcmc(params))

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(XDE)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Welcome to XDE version 2.18.0
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/XDE/firstMcmc.Rd_%03d_medium.png", width=480, height=480)
> ### Name: firstMcmc
> ### Title: Values for the first MCMC iteration
> ### Aliases: firstMcmc firstMcmc<-
> ### Keywords: methods
> 
> ### ** Examples
> 
> data(expressionSetList)
> params <- new("XdeParameter", phenotypeLabel="adenoVsquamous",
+               esetList=expressionSetList)
> str(firstMcmc(params))
List of 18
 $ Nu     : num [1:1500] -0.2947 -0.3909 0.1529 -0.0724 1.0499 ...
 $ DDelta : num [1:1500] -0.1922 -0.0779 -0.7088 -1.3063 0.4016 ...
 $ A      : num [1:3] 0.282 0.475 0.857
 $ B      : num [1:3] 0.879 0.616 0.534
 $ C2     : num 0.434
 $ Gamma2 : num 2.77
 $ R      : num [1:3] 0.471 0.213 0.152
 $ Rho    : num [1:3] 0.208 0.8 0.128
 $ Delta  : int [1:1500] 1 1 1 1 1 1 0 0 0 1 ...
 $ Xi     : num [1:3] 0.802 0.802 0.802
 $ Sigma2 : num [1:1500] 5.934 0.659 0.416 1.867 0.403 ...
 $ T      : num [1:3] 1.04 1 1
 $ L      : num [1:3] 0.975 1 0.971
 $ Phi    : num [1:1500] 1.812 0.955 1.065 0.241 0.111 ...
 $ Theta  : num [1:3] 1.035 1.007 0.946
 $ Lambda : num [1:3] 1.04 1 1.05
 $ Tau2R  : num [1:3] 0.992 0.991 1.017
 $ Tau2Rho: num [1:3] 1.001 0.999 1
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>