Last data update: 2014.03.03

 R: compareCoverages - camel measure for a single comparison.
compareCoveragesR Documentation

compareCoverages - camel measure for a single comparison.

Description

Comparing coverage profiles with the camel measures for the two groups of BAM files, for a given genomic region.

Usage

compareCoverages(ch, st, en, group, t1, t2, measure="DA", covdesc="covdesc")

Arguments

ch

Chromosome of the region of interest

st

Start of the region of interest

en

End of the region of interest

group

Name of the attribute/group in the experimental description (i.e. covdesc)

t1

First name of the attribute used for grouping

t2

Another name of the attribute used for grouping

measure

Method of comparison for the coverages in the selected genomic region

covdesc

Covdesc-like data frame - BAM files are read from row names

Value

A single camel value with the results of comparison.

Author(s)

Alicja Szabelska, Marek Wiewiorka, Michal Okoniewski

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO