Last data update: 2014.03.03

R: reportSamplePanelQC
reportSamplePanelQC-methodsR Documentation

reportSamplePanelQC

Description

Show raw intensity values for green and red channel for all samples in an experiment

Usage

reportSamplePanelQC(object, by=10, legend=TRUE, ...)

Arguments

object

QCIllumina object

by

numeric, number of samples in each plot

legend

logical, create a final plot with a common legend for the barplots

...

arguments are forwarded to barplot

Examples

data(QC.260)
par(mfrow=c(2,2))
reportSamplePanelQC(QC.260,by=8)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(beadarraySNP)
Loading required package: Biobase
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: quantsmooth
Loading required package: quantreg
Loading required package: SparseM

Attaching package: 'SparseM'

The following object is masked from 'package:base':

    backsolve

Loading required package: grid
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/beadarraySNP/reportSamplePanelQC-methods.Rd_%03d_medium.png", width=480, height=480)
> ### Name: reportSamplePanelQC-methods
> ### Title: reportSamplePanelQC
> ### Aliases: reportSamplePanelQC-methods reportSamplePanelQC
> ###   reportSamplePanelQC,QCIllumina-method
> ### Keywords: methods hplot
> 
> ### ** Examples
> 
> data(QC.260)
> par(mfrow=c(2,2))
> reportSamplePanelQC(QC.260,by=8)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>