Last data update: 2014.03.03

R: Gives a summary of the attribute pages
attributePagesR Documentation

Gives a summary of the attribute pages

Description

Attributes in BioMart databases are grouped together in attribute pages. The attributePages function gives a summary of the attribute categories and groups present in the BioMart. These page names can be used to display only a subset of the available attributes in the listAttributes function.

Usage

attributePages(mart)

Arguments

mart

object of class Mart, created with the useMart function.

Author(s)

Steffen Durinck

Examples


if(interactive()){
mart = useMart("ensembl", dataset="hsapiens_gene_ensembl")
attributeSummary(mart)
}

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(biomaRt)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/biomaRt/attributePages.Rd_%03d_medium.png", width=480, height=480)
> ### Name: attributePages
> ### Title: Gives a summary of the attribute pages
> ### Aliases: attributePages
> ### Keywords: methods
> 
> ### ** Examples
> 
> 
> #if(interactive()){
> mart = useMart("ensembl", dataset="hsapiens_gene_ensembl")
> attributeSummary(mart)
Error: could not find function "attributeSummary"
Execution halted