Displays the filter options

Description

Displays a set of predetermed values for the specified filter (if available).

Usage

filterOptions(filter,mart)

Arguments

Author(s)

Steffen Durinck

Examples

if(interactive()){
mart = useMart("ensembl", dataset="hsapiens_gene_ensembl")
filterOptions("chromosome_name", mart)
}

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(biomaRt)
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/biomaRt/filterOptions.Rd_%03d_medium.png", width=480, height=480)
> ### Name: filterOptions
> ### Title: Displays the filter options
> ### Aliases: filterOptions
> ### Keywords: methods
> 
> ### ** Examples
> 
> 
> #if(interactive()){
> mart = useMart("ensembl", dataset="hsapiens_gene_ensembl")
> filterOptions("chromosome_name", mart)
[1] "[1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,X,Y,MT,CHR_HG126_PATCH,CHR_HG1342_HG2282_PATCH,CHR_HG1362_PATCH,CHR_HG142_HG150_NOVEL_TEST,CHR_HG151_NOVEL_TEST,CHR_HG1651_PATCH,CHR_HG1832_PATCH,CHR_HG2021_PATCH,CHR_HG2030_PATCH,CHR_HG2058_PATCH,CHR_HG2062_PATCH,CHR_HG2066_PATCH,CHR_HG2072_PATCH,CHR_HG2095_PATCH,CHR_HG2104_PATCH,CHR_HG2116_PATCH,CHR_HG2128_PATCH,CHR_HG2191_PATCH,CHR_HG2213_PATCH,CHR_HG2217_PATCH,CHR_HG2232_PATCH,CHR_HG2233_PATCH,CHR_HG2235_PATCH,CHR_HG2239_PATCH,CHR_HG2247_PATCH,CHR_HG2249_PATCH,CHR_HG2288_HG2289_PATCH,CHR_HG2290_PATCH,CHR_HG2291_PATCH,CHR_HG2334_PATCH,CHR_HG23_PATCH,CHR_HG26_PATCH,CHR_HG986_PATCH,CHR_HSCHR10_1_CTG1,CHR_HSCHR10_1_CTG2,CHR_HSCHR10_1_CTG3,CHR_HSCHR10_1_CTG4,CHR_HSCHR10_1_CTG6,CHR_HSCHR11_1_CTG1_2,CHR_HSCHR11_1_CTG5,CHR_HSCHR11_1_CTG6,CHR_HSCHR11_1_CTG7,CHR_HSCHR11_1_CTG8,CHR_HSCHR11_2_CTG1,CHR_HSCHR11_2_CTG1_1,CHR_HSCHR11_3_CTG1,CHR_HSCHR12_1_CTG1,CHR_HSCHR12_1_CTG2_1,CHR_HSCHR12_2_CTG1,CHR_HSCHR12_2_CTG2,CHR_HSCHR12_2_CTG2_1,CHR_HSCHR12_3_CTG2,CHR_HSCHR12_3_CTG2_1,CHR_HSCHR12_4_CTG2,CHR_HSCHR12_4_CTG2_1,CHR_HSCHR12_5_CTG2,CHR_HSCHR12_5_CTG2_1,CHR_HSCHR12_6_CTG2_1,CHR_HSCHR13_1_CTG1,CHR_HSCHR13_1_CTG3,CHR_HSCHR13_1_CTG5,CHR_HSCHR13_1_CTG7,CHR_HSCHR13_1_CTG8,CHR_HSCHR14_1_CTG1,CHR_HSCHR14_2_CTG1,CHR_HSCHR14_3_CTG1,CHR_HSCHR14_7_CTG1,CHR_HSCHR15_1_CTG1,CHR_HSCHR15_1_CTG3,CHR_HSCHR15_1_CTG8,CHR_HSCHR15_2_CTG3,CHR_HSCHR15_2_CTG8,CHR_HSCHR15_3_CTG3,CHR_HSCHR15_3_CTG8,CHR_HSCHR15_4_CTG8,CHR_HSCHR15_5_CTG8,CHR_HSCHR15_6_CTG8,CHR_HSCHR16_1_CTG1,CHR_HSCHR16_1_CTG3_1,CHR_HSCHR16_2_CTG3_1,CHR_HSCHR16_3_CTG1,CHR_HSCHR16_4_CTG1,CHR_HSCHR16_4_CTG3_1,CHR_HSCHR16_5_CTG1,CHR_HSCHR16_CTG2,CHR_HSCHR17_10_CTG4,CHR_HSCHR17_1_CTG1,CHR_HSCHR17_1_CTG2,CHR_HSCHR17_1_CTG4,CHR_HSCHR17_1_CTG5,CHR_HSCHR17_1_CTG9,CHR_HSCHR17_2_CTG1,CHR_HSCHR17_2_CTG2,CHR_HSCHR17_2_CTG4,CHR_HSCHR17_2_CTG5,CHR_HSCHR17_3_CTG2,CHR_HSCHR17_3_CTG4,CHR_HSCHR17_4_CTG4,CHR_HSCHR17_5_CTG4,CHR_HSCHR17_6_CTG4,CHR_HSCHR17_7_CTG4,CHR_HSCHR17_8_CTG4,CHR_HSCHR17_9_CTG4,CHR_HSCHR18_1_CTG1_1,CHR_HSCHR18_1_CTG2_1,CHR_HSCHR18_2_CTG1_1,CHR_HSCHR18_2_CTG2,CHR_HSCHR18_2_CTG2_1,CHR_HSCHR18_3_CTG2_1,CHR_HSCHR18_5_CTG1_1,CHR_HSCHR18_ALT21_CTG2_1,CHR_HSCHR18_ALT2_CTG2_1,CHR_HSCHR19KIR_ABC08_A1_HAP_CTG3_1,CHR_HSCHR19KIR_ABC08_AB_HAP_C_P_CTG3_1,CHR_HSCHR19KIR_ABC08_AB_HAP_T_P_CTG3_1,CHR_HSCHR19KIR_FH05_A_HAP_CTG3_1,CHR_HSCHR19KIR_FH05_B_HAP_CTG3_1,CHR_HSCHR19KIR_FH06_A_HAP_CTG3_1,CHR_HSCHR19KIR_FH06_BA1_HAP_CTG3_1,CHR_HSCHR19KIR_FH08_A_HAP_CTG3_1,CHR_HSCHR19KIR_FH08_BAX_HAP_CTG3_1,CHR_HSCHR19KIR_FH13_A_HAP_CTG3_1,CHR_HSCHR19KIR_FH13_BA2_HAP_CTG3_1,CHR_HSCHR19KIR_FH15_A_HAP_CTG3_1,CHR_HSCHR19KIR_FH15_B_HAP_CTG3_1,CHR_HSCHR19KIR_G085_A_HAP_CTG3_1,CHR_HSCHR19KIR_G085_BA1_HAP_CTG3_1,CHR_HSCHR19KIR_G248_A_HAP_CTG3_1,CHR_HSCHR19KIR_G248_BA2_HAP_CTG3_1,CHR_HSCHR19KIR_GRC212_AB_HAP_CTG3_1,CHR_HSCHR19KIR_GRC212_BA1_HAP_CTG3_1,CHR_HSCHR19KIR_LUCE_A_HAP_CTG3_1,CHR_HSCHR19KIR_LUCE_BDEL_HAP_CTG3_1,CHR_HSCHR19KIR_RP5_B_HAP_CTG3_1,CHR_HSCHR19KIR_RSH_A_HAP_CTG3_1,CHR_HSCHR19KIR_RSH_BA2_HAP_CTG3_1,CHR_HSCHR19KIR_T7526_A_HAP_CTG3_1,CHR_HSCHR19KIR_T7526_BDEL_HAP_CTG3_1,CHR_HSCHR19LRC_COX1_CTG3_1,CHR_HSCHR19LRC_COX2_CTG3_1,CHR_HSCHR19LRC_LRC_I_CTG3_1,CHR_HSCHR19LRC_LRC_J_CTG3_1,CHR_HSCHR19LRC_LRC_S_CTG3_1,CHR_HSCHR19LRC_LRC_T_CTG3_1,CHR_HSCHR19LRC_PGF1_CTG3_1,CHR_HSCHR19LRC_PGF2_CTG3_1,CHR_HSCHR19_1_CTG2,CHR_HSCHR19_1_CTG3_1,CHR_HSCHR19_2_CTG2,CHR_HSCHR19_2_CTG3_1,CHR_HSCHR19_3_CTG2,CHR_HSCHR19_3_CTG3_1,CHR_HSCHR19_4_CTG2,CHR_HSCHR19_4_CTG3_1,CHR_HSCHR19_5_CTG2,CHR_HSCHR1_1_CTG11,CHR_HSCHR1_1_CTG3,CHR_HSCHR1_1_CTG31,CHR_HSCHR1_1_CTG32_1,CHR_HSCHR1_2_CTG3,CHR_HSCHR1_2_CTG31,CHR_HSCHR1_2_CTG32_1,CHR_HSCHR1_3_CTG3,CHR_HSCHR1_3_CTG31,CHR_HSCHR1_3_CTG32_1,CHR_HSCHR1_4_CTG3,CHR_HSCHR1_4_CTG31,CHR_HSCHR1_5_CTG32_1,CHR_HSCHR1_ALT2_1_CTG32_1,CHR_HSCHR20_1_CTG1,CHR_HSCHR20_1_CTG2,CHR_HSCHR20_1_CTG3,CHR_HSCHR20_1_CTG4,CHR_HSCHR21_2_CTG1_1,CHR_HSCHR21_3_CTG1_1,CHR_HSCHR21_4_CTG1_1,CHR_HSCHR21_5_CTG2,CHR_HSCHR21_6_CTG1_1,CHR_HSCHR21_8_CTG1_1,CHR_HSCHR22_1_CTG1,CHR_HSCHR22_1_CTG2,CHR_HSCHR22_1_CTG3,CHR_HSCHR22_1_CTG4,CHR_HSCHR22_1_CTG5,CHR_HSCHR22_1_CTG6,CHR_HSCHR22_1_CTG7,CHR_HSCHR22_2_CTG1,CHR_HSCHR22_3_CTG1,CHR_HSCHR22_4_CTG1,CHR_HSCHR22_5_CTG1,CHR_HSCHR22_6_CTG1,CHR_HSCHR22_7_CTG1,CHR_HSCHR2_1_CTG1,CHR_HSCHR2_1_CTG15,CHR_HSCHR2_1_CTG5,CHR_HSCHR2_1_CTG7,CHR_HSCHR2_1_CTG7_2,CHR_HSCHR2_2_CTG1,CHR_HSCHR2_2_CTG15,CHR_HSCHR2_2_CTG7,CHR_HSCHR2_2_CTG7_2,CHR_HSCHR2_3_CTG1,CHR_HSCHR2_3_CTG15,CHR_HSCHR2_3_CTG7_2,CHR_HSCHR2_4_CTG1,CHR_HSCHR3_1_CTG1,CHR_HSCHR3_1_CTG2_1,CHR_HSCHR3_1_CTG3,CHR_HSCHR3_2_CTG2_1,CHR_HSCHR3_2_CTG3,CHR_HSCHR3_3_CTG1,CHR_HSCHR3_3_CTG3,CHR_HSCHR3_4_CTG2_1,CHR_HSCHR3_4_CTG3,CHR_HSCHR3_5_CTG2_1,CHR_HSCHR3_5_CTG3,CHR_HSCHR3_6_CTG3,CHR_HSCHR3_7_CTG3,CHR_HSCHR3_8_CTG3,CHR_HSCHR3_9_CTG3,CHR_HSCHR4_1_CTG12,CHR_HSCHR4_1_CTG4,CHR_HSCHR4_1_CTG6,CHR_HSCHR4_1_CTG9,CHR_HSCHR4_2_CTG12,CHR_HSCHR4_2_CTG4,CHR_HSCHR4_3_CTG12,CHR_HSCHR4_4_CTG12,CHR_HSCHR4_5_CTG12,CHR_HSCHR4_6_CTG12,CHR_HSCHR4_7_CTG12,CHR_HSCHR4_8_CTG12,CHR_HSCHR4_9_CTG12,CHR_HSCHR5_1_CTG1,CHR_HSCHR5_1_CTG1_1,CHR_HSCHR5_1_CTG5,CHR_HSCHR5_2_CTG1,CHR_HSCHR5_2_CTG1_1,CHR_HSCHR5_2_CTG5,CHR_HSCHR5_3_CTG1,CHR_HSCHR5_3_CTG5,CHR_HSCHR5_4_CTG1,CHR_HSCHR5_4_CTG1_1,CHR_HSCHR5_5_CTG1,CHR_HSCHR5_6_CTG1,CHR_HSCHR5_7_CTG1,CHR_HSCHR6_1_CTG10,CHR_HSCHR6_1_CTG2,CHR_HSCHR6_1_CTG3,CHR_HSCHR6_1_CTG4,CHR_HSCHR6_1_CTG5,CHR_HSCHR6_1_CTG6,CHR_HSCHR6_1_CTG7,CHR_HSCHR6_1_CTG8,CHR_HSCHR6_1_CTG9,CHR_HSCHR6_8_CTG1,CHR_HSCHR6_MHC_APD_CTG1,CHR_HSCHR6_MHC_COX_CTG1,CHR_HSCHR6_MHC_DBB_CTG1,CHR_HSCHR6_MHC_MANN_CTG1,CHR_HSCHR6_MHC_MCF_CTG1,CHR_HSCHR6_MHC_QBL_CTG1,CHR_HSCHR6_MHC_SSTO_CTG1,CHR_HSCHR7_1_CTG1,CHR_HSCHR7_1_CTG4_4,CHR_HSCHR7_1_CTG6,CHR_HSCHR7_1_CTG7,CHR_HSCHR7_2_CTG1,CHR_HSCHR7_2_CTG4_4,CHR_HSCHR7_2_CTG6,CHR_HSCHR7_2_CTG7,CHR_HSCHR7_3_CTG6,CHR_HSCHR8_1_CTG1,CHR_HSCHR8_1_CTG6,CHR_HSCHR8_1_CTG7,CHR_HSCHR8_2_CTG1,CHR_HSCHR8_2_CTG7,CHR_HSCHR8_3_CTG1,CHR_HSCHR8_3_CTG7,CHR_HSCHR8_4_CTG1,CHR_HSCHR8_4_CTG7,CHR_HSCHR8_5_CTG1,CHR_HSCHR8_5_CTG7,CHR_HSCHR8_6_CTG1,CHR_HSCHR8_7_CTG1,CHR_HSCHR8_8_CTG1,CHR_HSCHR8_9_CTG1,CHR_HSCHR9_1_CTG1,CHR_HSCHR9_1_CTG2,CHR_HSCHR9_1_CTG3,CHR_HSCHR9_1_CTG4,CHR_HSCHR9_1_CTG5,CHR_HSCHR9_1_CTG6,CHR_HSCHRX_1_CTG3,CHR_HSCHRX_2_CTG12,CHR_HSCHRX_2_CTG3,GL000008.2,GL000009.2,GL000194.1,GL000195.1,GL000205.2,GL000213.1,GL000216.2,GL000218.1,GL000219.1,GL000220.1,GL000224.1,GL000225.1,KI270442.1,KI270706.1,KI270707.1,KI270708.1,KI270711.1,KI270713.1,KI270714.1,KI270721.1,KI270722.1,KI270723.1,KI270724.1,KI270726.1,KI270727.1,KI270728.1,KI270731.1,KI270733.1,KI270734.1,KI270741.1,KI270743.1,KI270744.1,KI270750.1,KI270752.1]"
> #}
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>