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Last data update: 2014.03.03

R: Link Two samples Inside a Node with Quadratic Bezier Curve

linkBioNetSamples

R Documentation

Link Two samples Inside a Node with Quadratic Bezier Curve

Description

Draw a quadratic Bezier curve line between two samples inside of a node. bioNetCorcos layout must be initialized first.

Usage

    linkBioNetSamples(nodeIndex, fromSample, toSample, outer, plotColors)

Arguments

`nodeIndex`	non-negative integer, the node on which link line is drawn
`fromSample`	non-negative integer, the first sample to be linked
`toSample`	non-negative integer, the second sample to be linked
`outer`	non-negative numeric, the start and end of link line relative to node center
`plotColors`	character vector, color for the link line (ribbon)

Value

None

Author(s)

Henry Zhang

Examples

    data(bionetPlotDemoData)
    expr <- bionetPlotDemoData$heatmapData[[1]]

    bioNet <- bc3net(expr)
    initializeBioNetCircos(bioNet)
    showBioNetNodesLayout()

    linkBioNetSamples(nodeIndex=2, fromSample=10, toSample=20, outer=0.9, 
            plotColors="red")

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(caOmicsV)
Loading required package: igraph

Attaching package: 'igraph'

The following objects are masked from 'package:stats':

    decompose, spectrum

The following object is masked from 'package:base':

    union

Loading required package: bc3net
Loading required package: c3net
Loading required package: infotheo
Loading required package: Matrix
Loading required package: lattice
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/caOmicsV/linkBioNetSamples.Rd_%03d_medium.png", width=480, height=480)
> ### Name: linkBioNetSamples
> ### Title: Link Two samples Inside a Node with Quadratic Bezier Curve
> ### Aliases: linkBioNetSamples
> ### Keywords: methods
> 
> ### ** Examples
> 
>     data(bionetPlotDemoData)
>     expr <- bionetPlotDemoData$heatmapData[[1]]
> 
>     bioNet <- bc3net(expr)
>     initializeBioNetCircos(bioNet)
>     showBioNetNodesLayout()
> 
>     linkBioNetSamples(nodeIndex=2, fromSample=10, toSample=20, outer=0.9, 
+             plotColors="red")
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>