Read Tecan Genios data files

Description

Read raw data file form Tecan Genios instrument

Usage

  readGenios(file)

Arguments

Value

a list with entries:

Author(s)

Julien Gagneur

See Also

readYeastGrower

Examples

# Get file names
# Parse file
dat = readGenios( system.file("extdata", "tecan_genios.txt", package="cellGrowth") )

# fit
n <- names( dat$OD)[36]
fit <- fitCellGrowth(x=dat$time,z=log2(dat$OD[[n]]), model = "locfit",locfit.h=6*60*60)
plot(fit)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(cellGrowth)
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cellGrowth/readGenios.Rd_%03d_medium.png", width=480, height=480)
> ### Name: readGenios
> ### Title: Read Tecan Genios data files
> ### Aliases: readGenios
> 
> ### ** Examples
> 
> # Get file names
> # Parse file
> dat = readGenios( system.file("extdata", "tecan_genios.txt", package="cellGrowth") )
> 
> # fit
> n <- names( dat$OD)[36]
> fit <- fitCellGrowth(x=dat$time,z=log2(dat$OD[[n]]), model = "locfit",locfit.h=6*60*60)
> plot(fit)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>