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Last data update: 2014.03.03

R: Create a well data frame

wellDataFrame

R Documentation

Create a well data frame

Description

Load a plate layout file and a file specifying the machine runs

Usage

  wellDataFrame(plateLayoutFile, machineRunFile)

Arguments

`plateLayoutFile`	a file containing the plate layout. The file must contain a column named `plate` and a column named `well`
`machineRunFile`	a file containing the machine runs The file must contain columns named `directory`, `filename` and `plate` specifying the directory and filename of the data for the corresponding run. The column `use` is optional. If present, only rows with `use == TRUE` are put into the dataframe.

Details

See the provided example files for the layout and machine run file formats.

Value

an object of class well and data.frame

Author(s)

Andreas Neudecker

Examples

plateLayout <-  system.file("extdata", "plateLayout.txt", package="cellGrowth")
machineRun <-  system.file("extdata", "machineRun.txt", package="cellGrowth")
well <- wellDataFrame(plateLayout,machineRun)
plot(well,plate=1)

Results


R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(cellGrowth)
Loading required package: locfit
locfit 1.5-9.1 	 2013-03-22
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cellGrowth/wellDataFrame.Rd_%03d_medium.png", width=480, height=480)
> ### Name: wellDataFrame
> ### Title: Create a well data frame
> ### Aliases: wellDataFrame
> 
> ### ** Examples
> 
> plateLayout <-  system.file("extdata", "plateLayout.txt", package="cellGrowth")
> machineRun <-  system.file("extdata", "machineRun.txt", package="cellGrowth")
> well <- wellDataFrame(plateLayout,machineRun)
> plot(well,plate=1)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>