384-well plate assay format to a 96-well plate library format

Description

Given a cellHTS object with data from an assay conducted in 384-well plate format, resulting from the combination of four consecutive 96-well plates of a reagent library, this function gives the plate identifiers for the 96-well plates.

Usage

getLibraryPlate(x)

Arguments

Details

The cellHTS object x contains data from a screening experiment where every set of four consecutive 96-well plates was combined into a 384-well plate. Therefore, the only available plate identifiers are for the assay plate format (384-well plates). The way the four 96-well plates are transferred to a 384-well plate during an experiment is as follows: the robot stars by transferring the samples from the first 96-well plate into the first quadrant of the 384-well plate, and so on.

Value

An S3 object of class cellHTS, which extends the argument x by the following element:

Author(s)

Ligia Braz ligia@ebi.ac.uk

Examples

    data(KcViabSmall)
    x <- getLibraryPlate(KcViabSmall)
    table(x$libPlate)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(cellHTS)
Loading required package: grid
Warning message:
Package 'cellHTS' is deprecated and will be removed from Bioconductor
  version 3.4. Please consider using 'cellHTS2' which offers better
  functionality for working with multiple screens and with
  multi-channel screens. 
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cellHTS/getLibraryPlate.Rd_%03d_medium.png", width=480, height=480)
> ### Name: getLibraryPlate
> ### Title: 384-well plate assay format to a 96-well plate library format
> ### Aliases: getLibraryPlate
> ### Keywords: manip
> 
> ### ** Examples
> 
>     data(KcViabSmall)
>     x <- getLibraryPlate(KcViabSmall)
>     table(x$libPlate)

 1  2  3  4  5  6  7  8  9 10 11 12 
96 96 96 96 96 96 96 96 96 96 96 96 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>