Last data update: 2014.03.03
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R: Class '"CnvGSAInput"'
CnvGSAInput-class | R Documentation |
Class "CnvGSAInput"
Description
Container class for the input structures required by the main function (i.e. cnvGSALogRegTest()).
Slots
config.ls :Object of class "list" containing the file names and paths.
params.ls :Object of class "list" containing the test parameters.
cnvData.ls :Object of class "list" containing CNV data.
phData.ls :Object of class "list" containing phenotype and covariate data.
gsData.ls :Object of class "list" containing gene-set data.
geneID.ls :Object of class "list" containing Gene ID data.
Constructor
CnvGSAInput( config.ls, params.ls, cnvData.ls, phData.ls, gsData.ls, geneID.ls) :
Creates a CnvGSAInput object.
config.ls Structure containing the file names and paths.
params.ls Structure containing main test parameters.
cnvData.ls Structure containing CNV data along with sample-to-class information and filters.
phData.ls Structure containing phenotype and covariate data.
gsData.ls Structure containing gene-set data.
geneID.ls Structure containing Gene ID data.
See the vignette for complete details on each of these structures as well as a full example of how to load them.
Methods
- config.ls
signature(obj = "CnvGSAInput") : Gets config.ls .
- config.ls<-
signature(obj = "CnvGSAInput") : Sets config.ls .
- params.ls
signature(obj = "CnvGSAInput") : Gets params.ls .
- params.ls<-
signature(obj = "CnvGSAInput") : Sets params.ls .
- cnvData.ls
signature(obj = "CnvGSAInput") : Gets cnvData.ls .
- cnvData.ls<-
signature(obj = "CnvGSAInput") : Sets cnvData.ls .
- phData.ls
signature(obj = "CnvGSAInput") : Gets phData.ls .
- phData.ls<-
signature(obj = "CnvGSAInput") : Sets phData.ls .
- gsData.ls
signature(obj = "CnvGSAInput") : Gets gsData.ls .
- gsData.ls<-
signature(obj = "CnvGSAInput") : Sets gsData.ls .
- geneID.ls
signature(obj = "CnvGSAInput") : Gets geneID.ls .
- geneID.ls<-
signature(obj = "CnvGSAInput") : Sets geneID.ls .
Author(s)
Joseph Lugo joseph.r.lugo@gmail.com
Examples
## See vignette for full details and worked example
Results
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