Creating the input S4 object needed to run the script.

Description

Creating the input S4 object needed to run the script.

Usage

cnvGSAIn(configFile, cnvGSA.in)

Arguments

Value

A cnvGSAInput S4 object.

Examples

library(cnvGSAdata)
data(cnvGSA_input_example)
## See vignette for full details and worked example

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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> library(cnvGSA)
Loading required package: brglm
Loading required package: profileModel
Loading required package: doParallel
Loading required package: foreach
Loading required package: iterators
Loading required package: parallel
Loading required package: GenomicRanges
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: splitstackshape
Loading required package: data.table

Attaching package: 'data.table'

The following object is masked from 'package:GenomicRanges':

    shift

The following object is masked from 'package:IRanges':

    shift

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cnvGSA/cnvGSAIn.Rd_%03d_medium.png", width=480, height=480)
> ### Name: cnvGSAIn
> ### Title: Creating the input S4 object needed to run the script.
> ### Aliases: cnvGSAIn
> 
> ### ** Examples
> 
> library(cnvGSAdata)
> data(cnvGSA_input_example)
> ## See vignette for full details and worked example
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>