cobindR SeqObj object constructor

Description

cobindR SeqObj object constructor

Usage

## S4 method for signature 
## 'DNAString,character,character,character,character,character'
seqObj(seq,id,name,species,comment,location)

Arguments

Value

cobindR SeqObj object

Author(s)

Rob Lehmann <r.lehmann@biologie.hu-berlin.de>

See Also

cobindRConfiguration

Examples

	library(Biostrings)
	so <- seqObj(DNAString('A'), id='', name='', species='',comment='',location='')
	sequence(so)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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Type 'q()' to quit R.

> library(cobindR)

Attaching package: 'cobindR'

The following object is masked from 'package:base':

    sequence

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cobindR/seqObj.Rd_%03d_medium.png", width=480, height=480)
> ### Name: seqObj
> ### Title: cobindR SeqObj object constructor
> ### Aliases: seqObj seqObj-method
> ###   seqObj,DNAString,character,character,character,character,character-method
> ### Keywords: constructor configuration cobindR
> 
> ### ** Examples
> 
> 	library(Biostrings)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: XVector
> 	so <- seqObj(DNAString('A'), id='', name='', species='',comment='',location='')
> 	sequence(so)
  1-letter "DNAString" instance
seq: A
> 
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>