returns sequence_source of cobindR configuration object

Description

returns sequence_source of cobindR configuration object.

Usage

## S4 method for signature 'configuration'
sequence_source(x)
## S4 replacement method for signature 'configuration,character'
sequence_source(x) <- value

Arguments

Value

sequence_source (character)

Author(s)

Rob Lehmann <r.lehmann@biologie.hu-berlin.de>

See Also

id,experiment_description,sequence_source,sequence_origin,sequence_type,bg_sequence_source,bg_sequence_origin,bg_sequence_type,species,downstream,upstream,max_distance,pairs,pfm_path,threshold,fdrThreshold,path,mart,pValue

Examples

cfg <- cobindRConfiguration()
sequence_source(cfg)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

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Type 'demo()' for some demos, 'help()' for on-line help, or
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> library(cobindR)

Attaching package: 'cobindR'

The following object is masked from 'package:base':

    sequence

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cobindR/sequence_source.Rd_%03d_medium.png", width=480, height=480)
> ### Name: sequence_source
> ### Title: returns sequence_source of cobindR configuration object
> ### Aliases: sequence_source sequence_source<-
> ###   sequence_source,configuration-method
> ###   sequence_source<-,configuration,character-method
> ### Keywords: accessor configuration cobindR
> 
> ### ** Examples
> 
> cfg <- cobindRConfiguration()
Warning message:
In .local(.Object, ...) :
  no config-file defined, generating configuration-object with default values
> sequence_source(cfg)
[1] "example.fasta"
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>