Last data update: 2014.03.03
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R: Bayesian colocalisation analysis using snpStats objects
coloc.abf.snpStats | R Documentation |
Bayesian colocalisation analysis using snpStats objects
Description
Bayesian colocalisation analysis using snpStats objects
Usage
coloc.abf.snpStats(X1, X2, Y1, Y2,
snps = intersect(colnames(X1), colnames(X2)),
type1 = c("quant", "cc"), type2 = c("quant", "cc"),
s1 = NA, s2 = NA, ...)
Arguments
X1 |
genetic data for dataset 1
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X2 |
genetic data for dataset 2
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Y1 |
response for dataset 1
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Y2 |
response for dataset 2
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snps |
optional subset of snps to use
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type1 |
type of data in Y1, "quant" or "cc"
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type2 |
type of data in Y2, "quant" or "cc"
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s1 |
the proportion of samples in dataset 1 that are
cases (only relevant for case control samples)
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s2 |
the proportion of samples in dataset 2 that are
cases (only relevant for case control samples)
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... |
parameters passed to coloc.abf
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Details
Generates p values via score tests, then runs
coloc.abf
Value
output of coloc.abf
Author(s)
Chris Wallace
Results
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