Supported by Dr. Osamu Ogasawara and  providing  . |
|
Last data update: 2014.03.03 |
CNV.detailplot_wrapDescriptionCreate CNV plot for all detail regions. UsageCNV.detailplot_wrap(object, ...) ## S4 method for signature 'CNV.analysis' CNV.detailplot_wrap(object, set_par = TRUE, main = NULL, ...) Arguments
DetailsThis method is a wrapper of the Value
Author(s)Volker Hovestadt conumee@hovestadt.bio Examples
# prepare
library(minfiData)
data(MsetEx)
d <- CNV.load(MsetEx)
data(detail_regions)
anno <- CNV.create_anno(detail_regions = detail_regions)
# create/modify object
x <- CNV.segment(CNV.detail(CNV.bin(CNV.fit(query = d['GroupB_1'],
ref = d[c('GroupA_1', 'GroupA_2', 'GroupA_3')], anno))))
# output plots
CNV.genomeplot(x)
CNV.genomeplot(x, chr = 'chr6')
CNV.detailplot(x, name = 'PTEN')
CNV.detailplot_wrap(x)
# output text files
CNV.write(x, what = 'segments')
CNV.write(x, what = 'detail')
CNV.write(x, what = 'bins')
CNV.write(x, what = 'probes')
Results
R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(conumee)
Loading required package: minfi
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: lattice
Loading required package: GenomicRanges
Loading required package: S4Vectors
Loading required package: stats4
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
colMeans, colSums, expand.grid, rowMeans, rowSums
Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: SummarizedExperiment
Loading required package: Biostrings
Loading required package: XVector
Loading required package: bumphunter
Loading required package: foreach
Loading required package: iterators
Loading required package: locfit
locfit 1.5-9.1 2013-03-22
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: IlluminaHumanMethylation450kmanifest
Loading required package: IlluminaHumanMethylation450kanno.ilmn12.hg19
> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/conumee/CNV.detailplot_wrap.Rd_%03d_medium.png", width=480, height=480)
> ### Name: CNV.detailplot_wrap
> ### Title: CNV.detailplot_wrap
> ### Aliases: CNV.detailplot_wrap CNV.detailplot_wrap,CNV.analysis-method
>
> ### ** Examples
>
> # prepare
> library(minfiData)
> data(MsetEx)
> d <- CNV.load(MsetEx)
> data(detail_regions)
> anno <- CNV.create_anno(detail_regions = detail_regions)
using genome annotations from UCSC
getting 450k annotations
- 470870 probes used
importing regions for detailed analysis
creating bins
- 53918 bins created
merging bins
- 15833 bins remaining
>
> # create/modify object
> x <- CNV.segment(CNV.detail(CNV.bin(CNV.fit(query = d['GroupB_1'],
+ ref = d[c('GroupA_1', 'GroupA_2', 'GroupA_3')], anno))))
>
> # output plots
> CNV.genomeplot(x)
> CNV.genomeplot(x, chr = 'chr6')
> CNV.detailplot(x, name = 'PTEN')
> CNV.detailplot_wrap(x)
>
> # output text files
> CNV.write(x, what = 'segments')
ID chrom loc.start loc.end num.mark bstat pval seg.mean
1 GroupB_1 chr1 635684 249195311 1593 NA NA -0.122
2 GroupB_1 chr10 105000 135462374 840 NA NA -0.058
3 GroupB_1 chr11 130000 48550000 319 7.851693 4.823678e-13 0.042
4 GroupB_1 chr11 48975000 56675000 15 12.294071 1.649339e-32 -0.091
5 GroupB_1 chr11 56975000 81250000 268 29.745363 9.783071e-192 0.057
6 GroupB_1 chr11 82500000 134873258 312 NA NA 0.199
7 GroupB_1 chr12 172870 54975000 351 11.507897 2.178154e-28 0.011
8 GroupB_1 chr12 55175000 56075000 5 8.018864 1.507192e-13 -0.178
9 GroupB_1 chr12 56125000 133770948 492 NA NA -0.064
10 GroupB_1 chr13 19110000 19525000 3 5.415424 4.913394e-06 0.119
11 GroupB_1 chr13 19725000 114025000 415 9.565066 1.824189e-19 0.348
12 GroupB_1 chr13 114075000 115079939 13 NA NA 0.151
13 GroupB_1 chr14 19325000 107119770 528 NA NA -0.197
14 GroupB_1 chr15 20225000 102410696 571 NA NA -0.189
15 GroupB_1 chr16 105000 90222377 624 NA NA 0.114
16 GroupB_1 chr17 25000 3875000 59 16.221715 8.901516e-57 -0.015
17 GroupB_1 chr17 3925000 38850000 317 7.820936 6.065279e-13 -0.160
18 GroupB_1 chr17 38925000 39400000 8 16.150879 3.079978e-56 -0.345
19 GroupB_1 chr17 39475000 81122605 430 NA NA -0.053
20 GroupB_1 chr18 80000 21125000 81 21.391647 3.413057e-99 -0.031
21 GroupB_1 chr18 21375000 77983624 162 NA NA -0.364
22 GroupB_1 chr19 180000 59084492 711 NA NA 0.050
23 GroupB_1 chr2 130000 243026238 1282 NA NA -0.027
24 GroupB_1 chr20 155000 8725000 65 13.487427 3.902028e-39 0.154
25 GroupB_1 chr20 9475000 62907760 294 NA NA 0.297
26 GroupB_1 chr21 10848948 31025000 27 5.747398 2.031374e-07 -0.073
27 GroupB_1 chr21 31525000 32125000 5 8.799096 1.101514e-16 -0.269
28 GroupB_1 chr21 32575000 48084948 125 NA NA -0.032
29 GroupB_1 chr22 16373925 51222283 300 NA NA -0.122
30 GroupB_1 chr3 155000 60150000 362 18.594996 1.060849e-74 0.056
31 GroupB_1 chr3 60850000 73675000 64 18.946425 1.813659e-77 0.215
32 GroupB_1 chr3 74175000 197831215 552 NA NA 0.035
33 GroupB_1 chr4 55000 10475000 136 14.363704 2.842430e-44 -0.125
34 GroupB_1 chr4 10925000 190972138 606 NA NA -0.253
35 GroupB_1 chr5 55000 162925000 709 15.310711 2.214461e-50 -0.046
36 GroupB_1 chr5 163475000 167325000 6 10.853541 1.884955e-25 -0.284
37 GroupB_1 chr5 167575000 180777630 134 NA NA -0.038
38 GroupB_1 chr6 155000 170952534 988 NA NA 0.024
39 GroupB_1 chr7 55000 159039332 952 NA NA 0.064
40 GroupB_1 chr8 105000 146277011 726 NA NA -0.133
41 GroupB_1 chr9 130000 8300000 20 10.897739 7.644010e-26 0.204
42 GroupB_1 chr9 10800000 68326090 60 16.752606 3.851767e-61 0.044
43 GroupB_1 chr9 71067734 79450000 17 10.918159 2.924101e-26 -0.235
44 GroupB_1 chr9 79625000 90250000 19 14.633854 7.577804e-47 0.014
45 GroupB_1 chr9 90475000 97450000 30 12.522876 2.179260e-34 0.225
46 GroupB_1 chr9 97650000 99925000 14 6.558129 2.436444e-09 0.074
47 GroupB_1 chr9 100150000 123625000 60 15.832035 3.243051e-54 0.217
48 GroupB_1 chr9 123675000 141076716 163 NA NA 0.083
seg.median
1 -0.114
2 -0.051
3 0.048
4 -0.081
5 0.061
6 0.203
7 0.014
8 -0.198
9 -0.049
10 0.099
11 0.351
12 0.141
13 -0.182
14 -0.177
15 0.113
16 -0.011
17 -0.145
18 -0.354
19 -0.033
20 -0.038
21 -0.365
22 0.059
23 -0.018
24 0.146
25 0.300
26 -0.079
27 -0.219
28 -0.028
29 -0.117
30 0.065
31 0.215
32 0.042
33 -0.116
34 -0.249
35 -0.040
36 -0.291
37 -0.029
38 0.031
39 0.067
40 -0.124
41 0.183
42 0.051
43 -0.232
44 0.014
45 0.230
46 0.071
47 0.227
48 0.079
> CNV.write(x, what = 'detail')
chr start end name sample probes.Var1 probes.Freq value
1 chr1 150547028 150554214 MCL1 GroupB_1 MCL1 18 -0.061
2 chr2 16078684 16087129 MYCN GroupB_1 MYCN 25 0.077
3 chr2 121552868 121750229 GLI2 GroupB_1 GLI2 86 -0.020
4 chr7 55084726 55275031 EGFR GroupB_1 EGFR 57 0.046
5 chr7 92234236 92465231 CDK6 GroupB_1 CDK6 54 0.108
6 chr7 116310460 116438440 MET GroupB_1 MET 24 -0.024
7 chr8 38268657 38328352 FGFR1 GroupB_1 FGFR1 36 -0.061
8 chr8 128746316 128753680 MYC GroupB_1 MYC 39 -0.027
9 chr9 21967752 22011312 CDKN2A/B GroupB_1 CDKN2A/B 14 0.064
10 chr9 98205265 98272831 PTCH1 GroupB_1 PTCH1 24 0.127
11 chr10 89621196 89728532 PTEN GroupB_1 PTEN 65 -0.025
12 chr11 69453874 69469242 CCND1 GroupB_1 CCND1 70 0.093
13 chr12 25358181 25405854 KRAS GroupB_1 KRAS 33 0.047
14 chr12 58141511 58148230 CDK4 GroupB_1 CDK4 24 -0.047
15 chr12 69199953 69239324 MDM2 GroupB_1 MDM2 15 -0.118
16 chr13 48875884 49056026 RB1 GroupB_1 RB1 61 0.294
17 chr17 7571721 7592868 TP53 GroupB_1 TP53 39 -0.140
18 chr17 29419946 29704695 NF1 GroupB_1 NF1 42 -0.216
19 chr17 37854255 37884915 ERBB2 GroupB_1 ERBB2 26 -0.106
20 chr19 30300902 30315215 CCNE1 GroupB_1 CCNE1 16 0.041
> CNV.write(x, what = 'bins')
Chromosome Start End Feature GroupB_1
1 chr1 521369 750000 chr1-0001 -0.103
2 chr1 750001 800000 chr1-0002 -0.125
3 chr1 800001 850000 chr1-0003 -0.149
4 chr1 850001 900000 chr1-0004 -0.079
5 chr1 900001 950000 chr1-0005 -0.069
6 chr1 950001 1000000 chr1-0006 -0.069
7 chr1 1000001 1050000 chr1-0007 -0.095
8 chr1 1050001 1100000 chr1-0008 -0.088
9 chr1 1100001 1150000 chr1-0009 -0.096
10 chr1 1150001 1200000 chr1-0010 -0.060
11 chr1 1200001 1250000 chr1-0011 -0.085
12 chr1 1250001 1300000 chr1-0012 -0.075
13 chr1 1300001 1350000 chr1-0013 -0.071
14 chr1 1350001 1400000 chr1-0014 -0.116
15 chr1 1400001 1450000 chr1-0015 -0.078
16 chr1 1450001 1500000 chr1-0016 -0.069
17 chr1 1500001 1550000 chr1-0017 -0.103
18 chr1 1550001 1600000 chr1-0018 -0.056
19 chr1 1600001 1650000 chr1-0019 -0.154
20 chr1 1650001 1700000 chr1-0020 -0.105
21 chr1 1700001 1800000 chr1-0021 -0.129
22 chr1 1800001 1850000 chr1-0022 -0.095
23 chr1 1850001 1900000 chr1-0023 -0.114
24 chr1 1900001 1950000 chr1-0024 -0.107
25 chr1 1950001 2000000 chr1-0025 -0.060
26 chr1 2000001 2050000 chr1-0026 -0.077
27 chr1 2050001 2100000 chr1-0027 -0.113
28 chr1 2100001 2150000 chr1-0028 -0.084
29 chr1 2150001 2200000 chr1-0029 -0.106
30 chr1 2200001 2250000 chr1-0030 -0.095
31 chr1 2250001 2300000 chr1-0031 -0.065
32 chr1 2300001 2350000 chr1-0032 -0.080
33 chr1 2350001 2400000 chr1-0033 -0.040
34 chr1 2400001 2450000 chr1-0034 -0.049
35 chr1 2450001 2500000 chr1-0035 -0.084
36 chr1 2500001 2550000 chr1-0036 -0.116
37 chr1 2550001 2634220 chr1-0037 -0.066
38 chr1 2684221 2750000 chr1-0038 -0.116
39 chr1 2750001 2800000 chr1-0039 -0.093
40 chr1 2800001 2850000 chr1-0040 -0.120
41 chr1 2850001 2900000 chr1-0041 -0.117
42 chr1 2900001 2950000 chr1-0042 -0.078
43 chr1 2950001 3000000 chr1-0043 -0.097
44 chr1 3000001 3050000 chr1-0044 -0.101
45 chr1 3050001 3100000 chr1-0045 -0.077
46 chr1 3100001 3150000 chr1-0046 -0.131
47 chr1 3150001 3200000 chr1-0047 -0.088
48 chr1 3200001 3250000 chr1-0048 -0.123
49 chr1 3250001 3300000 chr1-0049 -0.079
50 chr1 3300001 3350000 chr1-0050 -0.114
51 chr1 3350001 3400000 chr1-0051 -0.093
52 chr1 3400001 3450000 chr1-0052 -0.053
53 chr1 3450001 3500000 chr1-0053 -0.083
54 chr1 3500001 3550000 chr1-0054 -0.095
55 chr1 3550001 3600000 chr1-0055 -0.073
56 chr1 3600001 3650000 chr1-0056 -0.061
57 chr1 3650001 3700000 chr1-0057 -0.060
58 chr1 3700001 3750000 chr1-0058 -0.134
59 chr1 3750001 3800000 chr1-0059 -0.105
60 chr1 3800001 3845268 chr1-0060 -0.116
61 chr1 3995269 4150000 chr1-0061 -0.100
62 chr1 4150001 4200000 chr1-0062 -0.102
63 chr1 4200001 4450000 chr1-0063 -0.220
64 chr1 4450001 4500000 chr1-0064 -0.349
65 chr1 4500001 4700000 chr1-0065 -0.104
66 chr1 4700001 4750000 chr1-0066 -0.139
67 chr1 4750001 4800000 chr1-0067 -0.115
68 chr1 4800001 4850000 chr1-0068 -0.206
69 chr1 4850001 5550000 chr1-0069 -0.232
70 chr1 5550001 5750000 chr1-0070 -0.142
71 chr1 5750001 5800000 chr1-0071 -0.122
72 chr1 5800001 5900000 chr1-0072 -0.225
73 chr1 5900001 5950000 chr1-0073 -0.096
74 chr1 5950001 6050000 chr1-0074 -0.121
75 chr1 6050001 6100000 chr1-0075 -0.121
76 chr1 6100001 6150000 chr1-0076 -0.096
77 chr1 6150001 6200000 chr1-0077 -0.060
78 chr1 6200001 6250000 chr1-0078 -0.152
79 chr1 6250001 6300000 chr1-0079 -0.120
80 chr1 6300001 6350000 chr1-0080 -0.070
81 chr1 6350001 6400000 chr1-0081 -0.130
82 chr1 6400001 6450000 chr1-0082 -0.170
83 chr1 6450001 6500000 chr1-0083 -0.090
84 chr1 6500001 6550000 chr1-0084 -0.100
85 chr1 6550001 6600000 chr1-0085 -0.116
86 chr1 6600001 6650000 chr1-0086 -0.057
87 chr1 6650001 6700000 chr1-0087 -0.073
88 chr1 6700001 6800000 chr1-0088 -0.206
89 chr1 6800001 6850000 chr1-0089 -0.257
90 chr1 6850001 7000000 chr1-0090 -0.235
91 chr1 7000001 7100000 chr1-0091 -0.158
92 chr1 7100001 7150000 chr1-0092 -0.181
93 chr1 7150001 7300000 chr1-0093 -0.245
94 chr1 7300001 7450000 chr1-0094 -0.187
95 chr1 7450001 7550000 chr1-0095 -0.099
96 chr1 7550001 7700000 chr1-0096 -0.130
97 chr1 7700001 7750000 chr1-0097 -0.095
98 chr1 7750001 7800000 chr1-0098 -0.132
99 chr1 7800001 7850000 chr1-0099 -0.165
100 chr1 7850001 8000000 chr1-0100 -0.242
101 chr1 8000001 8050000 chr1-0101 -0.158
102 chr1 8050001 8100000 chr1-0102 -0.212
103 chr1 8100001 8250000 chr1-0103 -0.336
104 chr1 8250001 8350000 chr1-0104 -0.149
105 chr1 8350001 8400000 chr1-0105 -0.120
106 chr1 8400001 8450000 chr1-0106 -0.107
107 chr1 8450001 8500000 chr1-0107 -0.224
108 chr1 8500001 8700000 chr1-0108 -0.163
109 chr1 8700001 8850000 chr1-0109 -0.233
110 chr1 8850001 8900000 chr1-0110 -0.129
111 chr1 8900001 8950000 chr1-0111 -0.136
112 chr1 8950001 9050000 chr1-0112 -0.196
113 chr1 9050001 9100000 chr1-0113 -0.175
114 chr1 9100001 9150000 chr1-0114 -0.147
115 chr1 9150001 9200000 chr1-0115 -0.221
116 chr1 9200001 9250000 chr1-0116 -0.116
117 chr1 9250001 9300000 chr1-0117 -0.133
118 chr1 9300001 9350000 chr1-0118 -0.087
119 chr1 9350001 9400000 chr1-0119 -0.149
120 chr1 9400001 9450000 chr1-0120 -0.112
121 chr1 9450001 9550000 chr1-0121 -0.224
122 chr1 9550001 9600000 chr1-0122 -0.120
123 chr1 9600001 9650000 chr1-0123 -0.221
124 chr1 9650001 9700000 chr1-0124 -0.110
125 chr1 9700001 9750000 chr1-0125 -0.193
126 chr1 9750001 9800000 chr1-0126 -0.115
127 chr1 9800001 9900000 chr1-0127 -0.157
128 chr1 9900001 10000000 chr1-0128 -0.092
129 chr1 10000001 10050000 chr1-0129 -0.079
130 chr1 10050001 10100000 chr1-0130 -0.179
131 chr1 10100001 10350000 chr1-0131 -0.131
132 chr1 10350001 10450000 chr1-0132 -0.161
133 chr1 10450001 10500000 chr1-0133 -0.125
134 chr1 10500001 10550000 chr1-0134 -0.143
135 chr1 10550001 10650000 chr1-0135 -0.228
136 chr1 10650001 10700000 chr1-0136 -0.119
137 chr1 10700001 10750000 chr1-0137 -0.089
138 chr1 10750001 10800000 chr1-0138 -0.120
139 chr1 10800001 10850000 chr1-0139 -0.138
140 chr1 10850001 10900000 chr1-0140 -0.133
141 chr1 10900001 11000000 chr1-0141 -0.154
142 chr1 11000001 11100000 chr1-0142 -0.117
143 chr1 11100001 11150000 chr1-0143 -0.075
144 chr1 11150001 11300000 chr1-0144 -0.186
145 chr1 11300001 11350000 chr1-0145 -0.132
146 chr1 11350001 11500000 chr1-0146 -0.179
147 chr1 11500001 11550000 chr1-0147 -0.099
148 chr1 11550001 11700000 chr1-0148 -0.096
149 chr1 11700001 11750000 chr1-0149 -0.114
150 chr1 11750001 11800000 chr1-0150 -0.151
151 chr1 11800001 11850000 chr1-0151 -0.042
152 chr1 11850001 11900000 chr1-0152 -0.113
153 chr1 11900001 11950000 chr1-0153 -0.070
154 chr1 11950001 12000000 chr1-0154 -0.096
155 chr1 12000001 12050000 chr1-0155 -0.106
156 chr1 12050001 12100000 chr1-0156 -0.124
157 chr1 12100001 12150000 chr1-0157 -0.271
158 chr1 12150001 12200000 chr1-0158 -0.171
159 chr1 12200001 12250000 chr1-0159 -0.173
160 chr1 12250001 12300000 chr1-0160 -0.106
161 chr1 12300001 12500000 chr1-0161 -0.295
162 chr1 12500001 12550000 chr1-0162 -0.277
163 chr1 12550001 12600000 chr1-0163 -0.089
164 chr1 12600001 12650000 chr1-0164 -0.162
165 chr1 12650001 12700000 chr1-0165 -0.153
166 chr1 12700001 12800000 chr1-0166 -0.229
167 chr1 12800001 12900000 chr1-0167 -0.160
168 chr1 12900001 13052998 chr1-0168 -0.240
169 chr1 13607163 13900000 chr1-0169 -0.140
170 chr1 13900001 14000000 chr1-0170 -0.127
171 chr1 14000001 14050000 chr1-0171 -0.264
172 chr1 14050001 14100000 chr1-0172 -0.167
173 chr1 14100001 14150000 chr1-0173 -0.262
174 chr1 14150001 14550000 chr1-0174 -0.275
175 chr1 14550001 14900000 chr1-0175 -0.232
176 chr1 14900001 14950000 chr1-0176 -0.012
177 chr1 14950001 15150000 chr1-0177 -0.229
178 chr1 15150001 15250000 chr1-0178 -0.232
179 chr1 15250001 15300000 chr1-0179 -0.202
180 chr1 15300001 15450000 chr1-0180 -0.136
181 chr1 15450001 15500000 chr1-0181 -0.203
182 chr1 15500001 15550000 chr1-0182 -0.086
183 chr1 15550001 15700000 chr1-0183 -0.125
184 chr1 15700001 15750000 chr1-0184 -0.213
185 chr1 15750001 15850000 chr1-0185 -0.149
186 chr1 15850001 15900000 chr1-0186 -0.216
187 chr1 15900001 15950000 chr1-0187 -0.123
188 chr1 15950001 16050000 chr1-0188 -0.195
189 chr1 16050001 16100000 chr1-0189 -0.073
190 chr1 16100001 16250000 chr1-0190 -0.141
191 chr1 16250001 16300000 chr1-0191 -0.082
192 chr1 16300001 16350000 chr1-0192 -0.134
193 chr1 16350001 16400000 chr1-0193 -0.072
194 chr1 16400001 16450000 chr1-0194 -0.106
195 chr1 16450001 16500000 chr1-0195 -0.133
196 chr1 16500001 16550000 chr1-0196 -0.060
197 chr1 16550001 16600000 chr1-0197 -0.116
198 chr1 16600001 16700000 chr1-0198 -0.150
199 chr1 16700001 16800000 chr1-0199 -0.145
200 chr1 16800001 16850000 chr1-0200 -0.095
201 chr1 16850001 16900000 chr1-0201 -0.107
202 chr1 16900001 16950000 chr1-0202 -0.131
203 chr1 16950001 17000000 chr1-0203 -0.139
204 chr1 17000001 17050000 chr1-0204 -0.023
205 chr1 17050001 17125658 chr1-0205 -0.066
206 chr1 17175659 17200000 chr1-0206 -0.030
207 chr1 17200001 17250000 chr1-0207 -0.048
208 chr1 17250001 17300000 chr1-0208 -0.078
209 chr1 17300001 17350000 chr1-0209 -0.081
210 chr1 17350001 17400000 chr1-0210 -0.059
211 chr1 17400001 17500000 chr1-0211 -0.144
212 chr1 17500001 17550000 chr1-0212 -0.142
213 chr1 17550001 17600000 chr1-0213 -0.201
214 chr1 17600001 17700000 chr1-0214 -0.159
215 chr1 17700001 17750000 chr1-0215 -0.146
216 chr1 17750001 17800000 chr1-0216 -0.105
217 chr1 17800001 17900000 chr1-0217 -0.115
218 chr1 17900001 17950000 chr1-0218 -0.071
219 chr1 17950001 18050000 chr1-0219 -0.101
220 chr1 18050001 18400000 chr1-0220 -0.175
221 chr1 18400001 18450000 chr1-0221 -0.123
222 chr1 18450001 18650000 chr1-0222 -0.131
223 chr1 18650001 18800000 chr1-0223 -0.182
224 chr1 18800001 18950000 chr1-0224 -0.148
225 chr1 18950001 19000000 chr1-0225 -0.064
226 chr1 19000001 19050000 chr1-0226 -0.206
227 chr1 19050001 19150000 chr1-0227 -0.116
228 chr1 19150001 19200000 chr1-0228 -0.151
229 chr1 19200001 19250000 chr1-0229 -0.079
230 chr1 19250001 19300000 chr1-0230 -0.099
231 chr1 19300001 19500000 chr1-0231 -0.117
232 chr1 19500001 19550000 chr1-0232 -0.192
233 chr1 19550001 19600000 chr1-0233 -0.147
234 chr1 19600001 19650000 chr1-0234 -0.168
235 chr1 19650001 19700000 chr1-0235 -0.102
236 chr1 19700001 19800000 chr1-0236 -0.224
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352
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Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and