Artificial SNP array data

Description

Artificial SNP array data containing a logR track and a BAF track

Usage

data(logR)
data(BAF)

Format

Two corresponding data sets containing 10000 probes with logR and BAF measurements, respectively, for 2 samples. The two first columns in both data sets contain chromosome numbers and local probe positions (in base pairs), while the subsequent columns contain logR-values and BAF-values in the two data sets, respectively.

Examples

#Get data
data(logR)
data(BAF)

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
Copyright (C) 2016 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(copynumber)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/copynumber/SNPdata.rd_%03d_medium.png", width=480, height=480)
> ### Name: SNPdata
> ### Title: Artificial SNP array data
> ### Aliases: logR BAF
> 
> ### ** Examples
> 
> #Get data
> data(logR)
> data(BAF)
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>