Last data update: 2014.03.03

 R: Quantile normalize intensities for SNPs
snprmaAffyR Documentation

Quantile normalize intensities for SNPs

Description

Quantile normalize intensities for SNPs to a HapMap target reference distribution

Usage

snprmaAffy(cnSet, mixtureSampleSize = 10^5, eps = 0.1, seed = 1, verbose = TRUE)

Arguments

cnSet

Object of class CNSet

mixtureSampleSize

Sample size to be use when fitting the mixture model.

eps

Stop criteria.

seed

Seed to be used when sampling.

verbose

Logical.

Value

Returns nothing. Normalized intensities are written to files.

Author(s)

R.Scharpf

See Also

snprma

Results


Created & Maintained by Osamu Ogasawara (osamu.ogasawara@gmail.com) and IMSBIO