Class "CuffDist"

Description

A 'pointer' class to information relative to the distribution-level tests (promoters, splicing, and relative CDS usage)

Objects from the Class

Objects can be created by calls of the form new("CuffDist", DB, table, type, idField, ...).

Slots

DB:

Object of class "SQLiteConnection" ~~

table:

Object of class "character" ~~

type:

Object of class "character" ~~

idField:

Object of class "character" ~~

Methods

dim

signature(x = "CuffDist"): ...

samples

signature(x = "CuffDist"): ...

DB

signature(object = "CuffDist"): Accessor for @DB slot

Note

None

Author(s)

Loyal A. Goff

References

None

See Also

None

Examples

showClass("CuffDist")

Results

R version 3.3.1 (2016-06-21) -- "Bug in Your Hair"
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> library(cummeRbund)
Loading required package: BiocGenerics
Loading required package: parallel

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:parallel':

    clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
    clusterExport, clusterMap, parApply, parCapply, parLapply,
    parLapplyLB, parRapply, parSapply, parSapplyLB

The following objects are masked from 'package:stats':

    IQR, mad, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, cbind, colnames, do.call, duplicated, eval, evalq,
    get, grep, grepl, intersect, is.unsorted, lapply, lengths, mapply,
    match, mget, order, paste, pmax, pmax.int, pmin, pmin.int, rank,
    rbind, rownames, sapply, setdiff, sort, table, tapply, union,
    unique, unsplit

Loading required package: RSQLite
Loading required package: DBI
Loading required package: ggplot2
Loading required package: reshape2
Loading required package: fastcluster

Attaching package: 'fastcluster'

The following object is masked from 'package:stats':

    hclust

Loading required package: rtracklayer
Loading required package: GenomicRanges
Loading required package: S4Vectors
Loading required package: stats4

Attaching package: 'S4Vectors'

The following objects are masked from 'package:base':

    colMeans, colSums, expand.grid, rowMeans, rowSums

Loading required package: IRanges
Loading required package: GenomeInfoDb
Loading required package: Gviz
Loading required package: grid

Attaching package: 'cummeRbund'

The following object is masked from 'package:GenomicRanges':

    promoters

The following object is masked from 'package:IRanges':

    promoters

The following object is masked from 'package:BiocGenerics':

    conditions

> png(filename="/home/ddbj/snapshot/RGM3/R_BC/result/cummeRbund/CuffDist-class.Rd_%03d_medium.png", width=480, height=480)
> ### Name: CuffDist-class
> ### Title: Class "CuffDist"
> ### Aliases: CuffDist-class dim,CuffDist-method samples,CuffDist-method
> ###   DB,CuffDist-method
> ### Keywords: classes
> 
> ### ** Examples
> 
> showClass("CuffDist")
Class "CuffDist" [package "cummeRbund"]

Slots:
                                                                          
Name:                DB            table             type          idField
Class: SQLiteConnection        character        character        character
> 
> 
> 
> 
> 
> dev.off()
null device 
          1 
>